Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Neil3-201ENSMUST00000047768 2253 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 A530016L24Rik-202ENSMUST00000223266 1547 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
Col8a1Q00780 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 Jam2-201ENSMUST00000098407 1998 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 Ada-201ENSMUST00000017841 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 Fuz-201ENSMUST00000071207 1698 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 Adprm-201ENSMUST00000116363 1283 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Col8a1Q00780 Mir3113-201ENSMUST00000175478 76 ntBASIC13.8□□□□□ -0.2
Col8a1Q00780 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC13.8□□□□□ -0.2
Col8a1Q00780 Gm21887-203ENSMUST00000180251 531 ntAPPRIS P5 TSL 5 BASIC13.8□□□□□ -0.2
Col8a1Q00780 Gm34030-202ENSMUST00000211434 1126 ntTSL 5 BASIC13.8□□□□□ -0.2
Col8a1Q00780 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Col8a1Q00780 AC127349.1-201ENSMUST00000224590 266 ntBASIC13.8□□□□□ -0.2
Col8a1Q00780 Olfr30-201ENSMUST00000055204 1066 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
Col8a1Q00780 Sfxn5-202ENSMUST00000059034 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 1500011B03Rik-202ENSMUST00000112160 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 Usp32-202ENSMUST00000108075 7053 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
Col8a1Q00780 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 Lrriq4-203ENSMUST00000172350 1797 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
Col8a1Q00780 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 Pacsin1-202ENSMUST00000097360 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 Gm37500-201ENSMUST00000192059 1443 ntBASIC13.8□□□□□ -0.2
Col8a1Q00780 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
Col8a1Q00780 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC13.79□□□□□ -0.2
Col8a1Q00780 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Col8a1Q00780 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC13.79□□□□□ -0.2
Col8a1Q00780 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC13.79□□□□□ -0.2
Col8a1Q00780 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 2210408F21Rik-210ENSMUST00000151076 539 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 AC159114.1-201ENSMUST00000220349 266 ntBASIC13.79□□□□□ -0.2
Col8a1Q00780 1810013L24Rik-201ENSMUST00000023150 4066 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 Gm3248-201ENSMUST00000163885 2055 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
Col8a1Q00780 Atoh1-201ENSMUST00000101351 2121 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
Col8a1Q00780 Pdss2-201ENSMUST00000095725 2127 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 Gm14261-201ENSMUST00000145105 1429 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 Zfp264-201ENSMUST00000208656 1563 ntBASIC13.79□□□□□ -0.2
Col8a1Q00780 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 Bfsp2-201ENSMUST00000124310 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Col8a1Q00780 Bicd2-201ENSMUST00000048544 6309 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
Col8a1Q00780 Glmn-201ENSMUST00000078021 2015 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Cyth2-201ENSMUST00000056820 2527 ntAPPRIS ALT1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Ccl27a-202ENSMUST00000108032 350 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Styxl1-204ENSMUST00000111163 1276 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Gm3336-201ENSMUST00000179347 1149 ntAPPRIS P2 TSL 5 BASIC13.78□□□□□ -0.2
Col8a1Q00780 Gm43438-201ENSMUST00000198133 379 ntBASIC13.78□□□□□ -0.2
Col8a1Q00780 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC13.78□□□□□ -0.2
Col8a1Q00780 Gm3336-202ENSMUST00000213065 842 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Col4a3bp-201ENSMUST00000077672 2746 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Slc25a2-201ENSMUST00000058635 1369 ntAPPRIS P1 BASIC13.78□□□□□ -0.2
Col8a1Q00780 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Arid4b-204ENSMUST00000110536 5783 ntTSL 5 BASIC13.78□□□□□ -0.2
Col8a1Q00780 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Rexo1-201ENSMUST00000057910 5250 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Rassf1-204ENSMUST00000122225 1783 ntTSL 5 BASIC13.78□□□□□ -0.2
Col8a1Q00780 Rassf1-202ENSMUST00000093786 1787 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Il10rb-201ENSMUST00000023691 1850 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Appl1-201ENSMUST00000036570 7642 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Trnt1-202ENSMUST00000113247 1934 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Mtif3-201ENSMUST00000016654 2131 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Col8a1Q00780 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC13.78□□□□□ -0.2
Col8a1Q00780 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC13.78□□□□□ -0.2
Col8a1Q00780 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
Col8a1Q00780 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
Col8a1Q00780 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.2
Col8a1Q00780 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
Col8a1Q00780 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC13.77□□□□□ -0.21
Col8a1Q00780 Rhox7b-201ENSMUST00000115156 1091 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
Retrieved 100 of 76,532 protein–RNA pairs in 40.9 ms