Protein–RNA interactions for Protein: P63158

Hmgb1, High mobility group protein B1, mousemouse

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb1P63158 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Hmgb1P63158 Prss54-201ENSMUST00000052690 1438 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Hmgb1P63158 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Hmgb1P63158 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Hmgb1P63158 Ager-201ENSMUST00000015596 1370 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Hmgb1P63158 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Hmgb1P63158 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Hmgb1P63158 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Hmgb1P63158 Tmem56-203ENSMUST00000128909 6696 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb1P63158 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
Hmgb1P63158 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC17.83■□□□□ 0.44
Hmgb1P63158 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC17.83■□□□□ 0.44
Hmgb1P63158 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb1P63158 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb1P63158 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC17.83■□□□□ 0.44
Hmgb1P63158 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC17.83■□□□□ 0.44
Hmgb1P63158 Gm18959-201ENSMUST00000208954 655 ntBASIC17.83■□□□□ 0.44
Hmgb1P63158 Ankrd40-201ENSMUST00000021227 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb1P63158 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb1P63158 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb1P63158 Fbxo36-201ENSMUST00000097672 901 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb1P63158 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb1P63158 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb1P63158 Lrrn2-201ENSMUST00000027706 3428 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb1P63158 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb1P63158 Tmem57-201ENSMUST00000030628 3826 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb1P63158 Nkx1-2-201ENSMUST00000054562 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb1P63158 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb1P63158 Dbx1-201ENSMUST00000032717 2091 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb1P63158 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb1P63158 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Hmgb1P63158 Nlk-201ENSMUST00000142739 4444 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb1P63158 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb1P63158 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb1P63158 Ttbk1-201ENSMUST00000047034 6959 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
Hmgb1P63158 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC17.82■□□□□ 0.44
Hmgb1P63158 E330011M16Rik-201ENSMUST00000193614 1794 ntBASIC17.82■□□□□ 0.44
Hmgb1P63158 Fus-203ENSMUST00000106251 5536 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb1P63158 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC17.82■□□□□ 0.44
Hmgb1P63158 Ndufs7-201ENSMUST00000020361 758 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb1P63158 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC17.82■□□□□ 0.44
Hmgb1P63158 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb1P63158 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb1P63158 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC17.82■□□□□ 0.44
Hmgb1P63158 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Hmgb1P63158 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb1P63158 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Hmgb1P63158 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb1P63158 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb1P63158 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb1P63158 Rassf7-201ENSMUST00000046890 1525 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb1P63158 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb1P63158 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb1P63158 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb1P63158 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb1P63158 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Hmgb1P63158 Aftph-201ENSMUST00000035350 3998 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb1P63158 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb1P63158 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb1P63158 Fzd5-201ENSMUST00000063982 6915 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb1P63158 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb1P63158 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb1P63158 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb1P63158 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb1P63158 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb1P63158 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb1P63158 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb1P63158 Fhl1-201ENSMUST00000023854 2356 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb1P63158 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb1P63158 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Hmgb1P63158 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Hmgb1P63158 Zbp1-201ENSMUST00000029018 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb1P63158 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb1P63158 Vangl2-202ENSMUST00000111263 6528 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Hmgb1P63158 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb1P63158 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb1P63158 Mios-201ENSMUST00000040017 3710 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb1P63158 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb1P63158 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb1P63158 Papolb-201ENSMUST00000099400 4239 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
Hmgb1P63158 Disc1-206ENSMUST00000118942 2860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb1P63158 Gm7889-201ENSMUST00000185591 958 ntBASIC17.8■□□□□ 0.44
Hmgb1P63158 Gm15442-201ENSMUST00000117905 1527 ntBASIC17.8■□□□□ 0.44
Hmgb1P63158 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb1P63158 Rgl3-201ENSMUST00000045726 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb1P63158 Dgkz-202ENSMUST00000099709 3512 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Hmgb1P63158 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb1P63158 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb1P63158 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb1P63158 Wbp4-201ENSMUST00000022601 3704 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Hmgb1P63158 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgb1P63158 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgb1P63158 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC17.79■□□□□ 0.44
Hmgb1P63158 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgb1P63158 Ltbp1-201ENSMUST00000001927 6671 ntTSL 5 BASIC17.79■□□□□ 0.44
Hmgb1P63158 Ckap4-201ENSMUST00000053871 3089 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgb1P63158 Itga5-201ENSMUST00000023128 4382 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgb1P63158 Hmg20b-204ENSMUST00000122993 1502 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgb1P63158 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Hmgb1P63158 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms