Protein–RNA interactions for Protein: P54276

Msh6, DNA mismatch repair protein Msh6, mousemouse

Known RBP Predictions only

Length 1,358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msh6P54276 Kat5-201ENSMUST00000113641 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msh6P54276 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msh6P54276 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
Msh6P54276 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msh6P54276 Spire1-203ENSMUST00000115050 5405 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msh6P54276 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Msh6P54276 Abat-202ENSMUST00000115838 1348 ntTSL 2 BASIC20.46■□□□□ 0.87
Msh6P54276 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Msh6P54276 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
Msh6P54276 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msh6P54276 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Msh6P54276 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Msh6P54276 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msh6P54276 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC20.46■□□□□ 0.87
Msh6P54276 Fam159a-201ENSMUST00000053157 593 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
Msh6P54276 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msh6P54276 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msh6P54276 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Msh6P54276 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
Msh6P54276 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC20.45■□□□□ 0.86
Msh6P54276 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Msh6P54276 Fbxo22-201ENSMUST00000034859 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Msh6P54276 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Msh6P54276 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Msh6P54276 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Msh6P54276 Fjx1-201ENSMUST00000099678 3134 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
Msh6P54276 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
Msh6P54276 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Msh6P54276 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Msh6P54276 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC20.45■□□□□ 0.86
Msh6P54276 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Msh6P54276 Nap1l1-206ENSMUST00000219143 1365 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Msh6P54276 Nfib-204ENSMUST00000107246 3075 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
Msh6P54276 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
Msh6P54276 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC20.45■□□□□ 0.86
Msh6P54276 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Msh6P54276 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Msh6P54276 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Msh6P54276 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Msh6P54276 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Msh6P54276 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
Msh6P54276 Auts2-212ENSMUST00000178555 309 ntBASIC20.44■□□□□ 0.86
Msh6P54276 AC151286.1-201ENSMUST00000198489 145 ntBASIC20.44■□□□□ 0.86
Msh6P54276 Ndufaf2-202ENSMUST00000223734 556 ntBASIC20.44■□□□□ 0.86
Msh6P54276 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
Msh6P54276 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC20.44■□□□□ 0.86
Msh6P54276 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
Msh6P54276 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Msh6P54276 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Msh6P54276 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
Msh6P54276 Smox-204ENSMUST00000110181 2299 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Msh6P54276 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Msh6P54276 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh6P54276 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC20.43■□□□□ 0.86
Msh6P54276 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh6P54276 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh6P54276 Olah-202ENSMUST00000115087 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh6P54276 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
Msh6P54276 Pcmt1-202ENSMUST00000159917 2491 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh6P54276 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
Msh6P54276 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh6P54276 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh6P54276 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh6P54276 Rasd2-201ENSMUST00000132133 1299 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh6P54276 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC20.43■□□□□ 0.86
Msh6P54276 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh6P54276 3830406C13Rik-207ENSMUST00000223927 1010 ntBASIC20.43■□□□□ 0.86
Msh6P54276 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh6P54276 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh6P54276 A630072M18Rik-201ENSMUST00000190567 5410 ntBASIC20.43■□□□□ 0.86
Msh6P54276 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh6P54276 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh6P54276 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
Msh6P54276 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Msh6P54276 Zfand5-201ENSMUST00000025659 2834 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Msh6P54276 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Msh6P54276 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Msh6P54276 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Msh6P54276 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
Msh6P54276 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
Msh6P54276 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC20.42■□□□□ 0.86
Msh6P54276 Gm7063-201ENSMUST00000186840 981 ntBASIC20.42■□□□□ 0.86
Msh6P54276 Pmf1-205ENSMUST00000193338 795 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Msh6P54276 AC159106.1-201ENSMUST00000224421 690 ntBASIC20.42■□□□□ 0.86
Msh6P54276 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Msh6P54276 Ddx41-204ENSMUST00000224765 2199 ntBASIC20.42■□□□□ 0.86
Msh6P54276 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Msh6P54276 Haglr-201ENSMUST00000100000 2085 ntBASIC20.41■□□□□ 0.86
Msh6P54276 Trpc4ap-201ENSMUST00000041059 3204 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Msh6P54276 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Msh6P54276 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC20.41■□□□□ 0.86
Msh6P54276 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
Msh6P54276 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC20.41■□□□□ 0.86
Msh6P54276 Gm26517-201ENSMUST00000181279 1172 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Msh6P54276 1700028B04Rik-202ENSMUST00000190841 971 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Msh6P54276 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Msh6P54276 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Msh6P54276 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
Msh6P54276 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Msh6P54276 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 27.8 ms