Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Gm2651-201ENSMUST00000203560 838 ntBASIC15.33■□□□□ 0.04
Msx1P13297 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC15.33■□□□□ 0.04
Msx1P13297 Gm32390-201ENSMUST00000212713 1172 ntBASIC15.33■□□□□ 0.04
Msx1P13297 Rps4l-201ENSMUST00000071745 943 ntBASIC15.33■□□□□ 0.04
Msx1P13297 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Msx1P13297 Slc25a3-206ENSMUST00000170810 1341 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
Msx1P13297 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Msx1P13297 Mef2d-201ENSMUST00000001455 5401 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Msx1P13297 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
Msx1P13297 Tenm3-204ENSMUST00000110346 2267 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
Msx1P13297 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Msx1P13297 Cd302-202ENSMUST00000074606 1354 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Msx1P13297 Phtf1-201ENSMUST00000055425 3060 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Msx1P13297 Gm26568-201ENSMUST00000180496 1594 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Msx1P13297 Prss53-201ENSMUST00000121394 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Msx1P13297 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Msx1P13297 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Msx1P13297 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Msx1P13297 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Msx1P13297 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Msx1P13297 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Msx1P13297 Nisch-208ENSMUST00000165981 2415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Msx1P13297 Letm1-203ENSMUST00000148451 2478 ntTSL 2 BASIC15.32■□□□□ 0.04
Msx1P13297 Gm7935-201ENSMUST00000100555 1278 ntBASIC15.32■□□□□ 0.04
Msx1P13297 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC15.32■□□□□ 0.04
Msx1P13297 Taco1os-201ENSMUST00000140736 644 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Msx1P13297 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC15.32■□□□□ 0.04
Msx1P13297 Hist1h2ai-201ENSMUST00000070124 393 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Msx1P13297 Hist1h2an-201ENSMUST00000091751 393 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Msx1P13297 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Msx1P13297 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Msx1P13297 Gfra2-202ENSMUST00000227633 1480 ntBASIC15.32■□□□□ 0.04
Msx1P13297 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Msx1P13297 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Msx1P13297 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Msx1P13297 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Msx1P13297 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Msx1P13297 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Msx1P13297 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC15.31■□□□□ 0.04
Msx1P13297 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC15.31■□□□□ 0.04
Msx1P13297 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Park7-203ENSMUST00000105674 937 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Msx1P13297 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Msx1P13297 Tex30-206ENSMUST00000133677 935 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Frs3os-201ENSMUST00000136531 978 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC15.31■□□□□ 0.04
Msx1P13297 AC161829.1-201ENSMUST00000220298 281 ntBASIC15.31■□□□□ 0.04
Msx1P13297 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Pdlim4-202ENSMUST00000093109 962 ntTSL 5 BASIC15.31■□□□□ 0.04
Msx1P13297 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Lonp2-201ENSMUST00000034141 2860 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC15.31■□□□□ 0.04
Msx1P13297 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
Msx1P13297 Uchl5-201ENSMUST00000018333 1845 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Msx1P13297 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC15.31■□□□□ 0.04
Msx1P13297 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Spata6-201ENSMUST00000038868 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Msx1P13297 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Msx1P13297 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Msx1P13297 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Msx1P13297 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Msx1P13297 H2-DMb1-201ENSMUST00000114232 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Msx1P13297 Naa10-204ENSMUST00000114389 1031 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Msx1P13297 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Msx1P13297 Gm12644-201ENSMUST00000119935 606 ntBASIC15.3■□□□□ 0.04
Msx1P13297 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Msx1P13297 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC15.3■□□□□ 0.04
Msx1P13297 Gm37102-201ENSMUST00000195740 1105 ntBASIC15.3■□□□□ 0.04
Msx1P13297 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Msx1P13297 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Msx1P13297 AC153556.1-201ENSMUST00000215135 794 ntTSL 5 BASIC15.3■□□□□ 0.04
Msx1P13297 Zkscan4-202ENSMUST00000225845 1506 ntBASIC15.3■□□□□ 0.04
Msx1P13297 Uso1-201ENSMUST00000031355 3898 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Msx1P13297 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Msx1P13297 BC031181-201ENSMUST00000040284 1047 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Msx1P13297 Crhbp-201ENSMUST00000045583 1701 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Msx1P13297 Arl11-201ENSMUST00000055159 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Msx1P13297 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Msx1P13297 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Msx1P13297 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Msx1P13297 Nr3c2-203ENSMUST00000109912 5675 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Msx1P13297 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Msx1P13297 Impdh1-202ENSMUST00000159124 2600 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Msx1P13297 A930003O13Rik-203ENSMUST00000199056 1955 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Msx1P13297 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Msx1P13297 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Msx1P13297 Sox18-201ENSMUST00000054491 1620 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 35.4 ms