Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
RaraP11416 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RaraP11416 Bmt2-202ENSMUST00000203078 4462 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RaraP11416 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RaraP11416 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RaraP11416 Ubqln4-201ENSMUST00000008748 3330 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RaraP11416 Cdc34-202ENSMUST00000166603 1078 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RaraP11416 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
RaraP11416 Gm42884-202ENSMUST00000202523 423 ntTSL 3 BASIC17.55■□□□□ 0.4
RaraP11416 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC17.55■□□□□ 0.4
RaraP11416 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RaraP11416 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
RaraP11416 Brap-201ENSMUST00000031414 3744 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RaraP11416 Syngr3-201ENSMUST00000007236 1965 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RaraP11416 Fa2h-201ENSMUST00000038475 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RaraP11416 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RaraP11416 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RaraP11416 Gm26039-201ENSMUST00000158152 144 ntBASIC17.54■□□□□ 0.4
RaraP11416 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC17.54■□□□□ 0.4
RaraP11416 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC17.54■□□□□ 0.4
RaraP11416 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC17.54■□□□□ 0.4
RaraP11416 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RaraP11416 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RaraP11416 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RaraP11416 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC17.54■□□□□ 0.4
RaraP11416 Ccdc166-201ENSMUST00000182172 2584 ntBASIC17.54■□□□□ 0.4
RaraP11416 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RaraP11416 Plekha4-207ENSMUST00000211227 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
RaraP11416 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RaraP11416 A4galt-201ENSMUST00000049530 2088 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RaraP11416 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
RaraP11416 Rnf13-205ENSMUST00000198214 2027 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
RaraP11416 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC17.54■□□□□ 0.4
RaraP11416 Elp6-201ENSMUST00000068071 2219 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RaraP11416 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
RaraP11416 Ldha-201ENSMUST00000005051 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RaraP11416 Rhbg-201ENSMUST00000171887 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RaraP11416 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RaraP11416 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC17.53■□□□□ 0.4
RaraP11416 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RaraP11416 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
RaraP11416 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
RaraP11416 Ablim1-204ENSMUST00000111524 1251 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
RaraP11416 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RaraP11416 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC17.53■□□□□ 0.4
RaraP11416 Mir1668-201ENSMUST00000184114 107 ntBASIC17.53■□□□□ 0.4
RaraP11416 AC159205.6-201ENSMUST00000224935 887 ntBASIC17.53■□□□□ 0.4
RaraP11416 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RaraP11416 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
RaraP11416 Higd1a-201ENSMUST00000060251 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RaraP11416 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
RaraP11416 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC17.53■□□□□ 0.4
RaraP11416 Hs3st5-203ENSMUST00000168572 2715 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RaraP11416 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RaraP11416 Ogfod2-201ENSMUST00000024470 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
RaraP11416 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC17.52■□□□□ 0.4
RaraP11416 Gm9867-201ENSMUST00000192212 2647 ntBASIC17.52■□□□□ 0.4
RaraP11416 Arhgef2-202ENSMUST00000107510 4390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
RaraP11416 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RaraP11416 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RaraP11416 B3gat2-203ENSMUST00000144602 1488 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
RaraP11416 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC17.52■□□□□ 0.4
RaraP11416 Lhx5-201ENSMUST00000031591 2689 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RaraP11416 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
RaraP11416 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC17.52■□□□□ 0.4
RaraP11416 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
RaraP11416 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC17.52■□□□□ 0.4
RaraP11416 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC17.52■□□□□ 0.4
RaraP11416 Rpl14-201ENSMUST00000165532 1009 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RaraP11416 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC17.52■□□□□ 0.4
RaraP11416 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RaraP11416 App-203ENSMUST00000226801 3299 ntAPPRIS ALT2 BASIC17.52■□□□□ 0.4
RaraP11416 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
RaraP11416 Kbtbd2-202ENSMUST00000114323 3816 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RaraP11416 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RaraP11416 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.39
RaraP11416 App-207ENSMUST00000227737 2827 ntBASIC17.52■□□□□ 0.39
RaraP11416 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
RaraP11416 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RaraP11416 1700001O22Rik-201ENSMUST00000050003 1672 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
RaraP11416 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RaraP11416 Ppp2r5e-201ENSMUST00000021447 4810 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RaraP11416 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RaraP11416 Chst10-201ENSMUST00000027249 2975 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RaraP11416 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC17.51■□□□□ 0.39
RaraP11416 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RaraP11416 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RaraP11416 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RaraP11416 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
RaraP11416 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
RaraP11416 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RaraP11416 Gm44729-201ENSMUST00000206759 2052 ntBASIC17.51■□□□□ 0.39
RaraP11416 Gabrd-201ENSMUST00000030925 1921 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
RaraP11416 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RaraP11416 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
RaraP11416 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RaraP11416 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RaraP11416 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
RaraP11416 Crhr2-203ENSMUST00000114374 1440 ntAPPRIS ALT1 TSL 5 BASIC17.5■□□□□ 0.39
RaraP11416 Gm32996-201ENSMUST00000199828 1447 ntBASIC17.5■□□□□ 0.39
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms