Protein–RNA interactions for Protein: P28356

HOXD9, Homeobox protein Hox-D9, humanhuman

Predicted RBP Predictions only

Length 352 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD9P28356 AC096577.2-201ENST00000611455 153 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 uc_338.32-201ENST00000615087 172 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 AL603758.1-201ENST00000618654 241 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 TEX41-280ENST00000629185 591 ntTSL 5 BASIC3.59□□□□□ -1.83
HOXD9P28356 AC244205.2-202ENST00000635781 342 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
HOXD9P28356 GABPAP-201ENST00000419271 1356 ntBASIC3.59□□□□□ -1.83
HOXD9P28356 ATP2B1-202ENST00000359142 6977 ntTSL 5 BASIC3.59□□□□□ -1.84
HOXD9P28356 MCF2-202ENST00000370573 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD9P28356 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD9P28356 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD9P28356 GAB1-203ENST00000505913 2477 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXD9P28356 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD9P28356 Y_RNA.100-201ENST00000363141 102 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 Y_RNA.333-201ENST00000365274 102 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 RNU5E-6P-201ENST00000365574 115 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 RNU4-20P-201ENST00000365601 151 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 SNORA32.2-201ENST00000384049 122 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 Y_RNA.431-201ENST00000384086 102 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 Y_RNA.474-201ENST00000384341 102 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 MIR3074-201ENST00000384885 81 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 TXNP7-201ENST00000406296 293 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 RNU6-516P-201ENST00000411381 104 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXD9P28356 AC005534.2-201ENST00000431047 433 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXD9P28356 AC005094.1-201ENST00000440420 368 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 AL078587.1-201ENST00000448580 542 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD9P28356 FGF7P3-201ENST00000454645 303 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 AC005538.1-201ENST00000455991 594 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD9P28356 AC026427.2-201ENST00000506228 536 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 AC092436.1-201ENST00000506450 503 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 RNU6-64P-201ENST00000517119 105 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD9P28356 BTF3P12-201ENST00000519620 469 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 FAM60DP-201ENST00000524174 632 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD9P28356 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD9P28356 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.58□□□□□ -1.84
HOXD9P28356 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC3.58□□□□□ -1.84
HOXD9P28356 MIR4293-201ENST00000584305 78 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 AC020914.4-201ENST00000597690 277 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 AC012669.1-201ENST00000603209 283 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD9P28356 AC093913.1-201ENST00000614178 329 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 AC048347.1-201ENST00000624621 427 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD9P28356 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC3.58□□□□□ -1.84
HOXD9P28356 MIR1302-1-201ENST00000637932 143 ntBASIC3.58□□□□□ -1.84
HOXD9P28356 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD9P28356 WNK3-202ENST00000375159 5403 ntAPPRIS P3 TSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD9P28356 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC3.58□□□□□ -1.84
HOXD9P28356 AL049830.3-201ENST00000555108 1991 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
HOXD9P28356 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD9P28356 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD9P28356 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD9P28356 Y_RNA.58-201ENST00000362807 102 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 RNU6-552P-201ENST00000362869 119 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 Y_RNA.154-201ENST00000363624 102 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 RNU6-960P-201ENST00000364056 120 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 U3.12-201ENST00000364498 214 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 RNA5SP267-201ENST00000364893 126 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 RNY3P1-201ENST00000365085 102 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 RNY3-201ENST00000365484 102 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 Y_RNA.490-201ENST00000384413 102 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 AL136372.1-201ENST00000403060 228 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 RNU2-47P-201ENST00000410649 186 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 Y_RNA.615-201ENST00000410769 117 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 ATP2B2-IT2-201ENST00000419591 507 ntTSL 2 BASIC3.57□□□□□ -1.84
HOXD9P28356 HMGB1P18-201ENST00000438801 619 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 MTCYBP6-201ENST00000441810 138 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 MTND1P18-201ENST00000448191 573 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 SNORD97-201ENST00000459187 142 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 AC068647.1-201ENST00000489539 2265 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 AC135721.1-201ENST00000497954 479 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 AC117522.3-201ENST00000507974 584 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 RNU4-49P-201ENST00000516080 140 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 RN7SKP256-201ENST00000517201 314 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 AC100870.1-201ENST00000522035 505 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD9P28356 AC092745.2-201ENST00000537764 620 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD9P28356 DIAPH2-AS1-203ENST00000542084 450 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXD9P28356 AC026333.2-201ENST00000542164 106 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.57□□□□□ -1.84
HOXD9P28356 CR383656.7-201ENST00000548164 174 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC3.57□□□□□ -1.84
HOXD9P28356 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXD9P28356 MIR3690-201ENST00000580266 75 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC3.57□□□□□ -1.84
HOXD9P28356 PART1_1.1-201ENST00000611761 217 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 AL158196.1-201ENST00000616786 434 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXD9P28356 RMST_7.1-201ENST00000621935 268 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 AL136313.1-201ENST00000624804 202 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 RMDN2-AS1-204ENST00000626669 448 ntTSL 5 BASIC3.57□□□□□ -1.84
HOXD9P28356 hsa-mir-4776-1.1-201ENST00000636364 80 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 DST-201ENST00000244364 16742 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD9P28356 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
HOXD9P28356 MFSD8-233ENST00000641482 4860 ntBASIC3.57□□□□□ -1.84
HOXD9P28356 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms