Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 GUCA1C-202ENST00000393963 900 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
VCANP13611 AF178030.1-201ENST00000415088 402 ntTSL 2 BASIC0.6□□□□□ -2.31
VCANP13611 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
VCANP13611 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC0.6□□□□□ -2.31
VCANP13611 C2orf27A-204ENST00000623058 969 ntBASIC0.6□□□□□ -2.31
VCANP13611 CAPZA2-215ENST00000639546 129 ntTSL 5 BASIC0.6□□□□□ -2.31
VCANP13611 Y_RNA.185-201ENST00000363894 100 ntBASIC0.59□□□□□ -2.31
VCANP13611 PCYT1B-AS1-201ENST00000432626 275 ntTSL 2 BASIC0.59□□□□□ -2.31
VCANP13611 SDCBPP1-201ENST00000440192 890 ntBASIC0.59□□□□□ -2.31
VCANP13611 RPS27P23-201ENST00000487608 251 ntBASIC0.59□□□□□ -2.31
VCANP13611 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC0.59□□□□□ -2.31
VCANP13611 MTCO1P47-201ENST00000523889 1271 ntBASIC0.59□□□□□ -2.31
VCANP13611 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.59□□□□□ -2.32
VCANP13611 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC0.59□□□□□ -2.32
VCANP13611 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.59□□□□□ -2.32
VCANP13611 KLF3P2-201ENST00000465138 268 ntBASIC0.59□□□□□ -2.32
VCANP13611 RBM43P1-201ENST00000476891 1081 ntBASIC0.59□□□□□ -2.32
VCANP13611 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC0.59□□□□□ -2.32
VCANP13611 AC025857.1-201ENST00000525252 377 ntBASIC0.59□□□□□ -2.32
VCANP13611 HTN3-202ENST00000526767 578 ntAPPRIS P2 TSL 1 (best) BASIC0.59□□□□□ -2.32
VCANP13611 MIR5194-201ENST00000582634 120 ntBASIC0.59□□□□□ -2.32
VCANP13611 AC103710.4-201ENST00000609301 899 ntBASIC0.59□□□□□ -2.32
VCANP13611 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC0.59□□□□□ -2.32
VCANP13611 RNU4-73P-201ENST00000363164 141 ntBASIC0.59□□□□□ -2.32
VCANP13611 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC0.59□□□□□ -2.32
VCANP13611 AC092628.1-201ENST00000436250 252 ntBASIC0.59□□□□□ -2.32
VCANP13611 HSFY3P-201ENST00000444242 1191 ntBASIC0.59□□□□□ -2.32
VCANP13611 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC0.59□□□□□ -2.32
VCANP13611 RPS27P26-201ENST00000494583 239 ntBASIC0.59□□□□□ -2.32
VCANP13611 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC0.59□□□□□ -2.32
VCANP13611 AC008269.2-201ENST00000561915 1105 ntBASIC0.59□□□□□ -2.32
VCANP13611 AC009974.1-201ENST00000608881 455 ntBASIC0.59□□□□□ -2.32
VCANP13611 Y_RNA.804-201ENST00000615262 101 ntBASIC0.59□□□□□ -2.32
VCANP13611 AL031601.2-202ENST00000622650 282 ntBASIC0.59□□□□□ -2.32
VCANP13611 AL355497.1-201ENST00000406262 551 ntBASIC0.58□□□□□ -2.32
VCANP13611 RPS25P9-201ENST00000435591 252 ntBASIC0.58□□□□□ -2.32
VCANP13611 AC118282.2-201ENST00000508739 374 ntBASIC0.58□□□□□ -2.32
VCANP13611 CYCSP2-201ENST00000558168 301 ntBASIC0.58□□□□□ -2.32
VCANP13611 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC0.58□□□□□ -2.32
VCANP13611 AL022578.1-201ENST00000439330 1433 ntBASIC0.58□□□□□ -2.32
VCANP13611 MRPL42P6-201ENST00000486397 371 ntBASIC0.58□□□□□ -2.32
VCANP13611 AC117454.1-201ENST00000491120 168 ntBASIC0.58□□□□□ -2.32
VCANP13611 YWHAQP7-201ENST00000603536 658 ntBASIC0.58□□□□□ -2.32
VCANP13611 AC011468.4-201ENST00000603942 409 ntBASIC0.58□□□□□ -2.32
VCANP13611 AC106028.5-201ENST00000610332 395 ntBASIC0.58□□□□□ -2.32
VCANP13611 AC091932.3-201ENST00000624223 323 ntBASIC0.58□□□□□ -2.32
VCANP13611 RNU6-112P-201ENST00000363599 104 ntBASIC0.57□□□□□ -2.32
VCANP13611 RNU6-923P-201ENST00000364753 107 ntBASIC0.57□□□□□ -2.32
VCANP13611 RNU6-955P-201ENST00000410497 104 ntBASIC0.57□□□□□ -2.32
VCANP13611 HMGN2P9-201ENST00000476875 229 ntBASIC0.57□□□□□ -2.32
VCANP13611 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC0.57□□□□□ -2.32
VCANP13611 RNA5SP118-201ENST00000410385 109 ntBASIC0.57□□□□□ -2.32
VCANP13611 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC0.57□□□□□ -2.32
VCANP13611 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC0.57□□□□□ -2.32
VCANP13611 AC119618.1-201ENST00000434191 222 ntBASIC0.57□□□□□ -2.32
VCANP13611 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC0.57□□□□□ -2.32
VCANP13611 RPS27P21-201ENST00000486977 252 ntBASIC0.57□□□□□ -2.32
VCANP13611 LDHBP3-201ENST00000514909 822 ntBASIC0.57□□□□□ -2.32
VCANP13611 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.57□□□□□ -2.32
VCANP13611 AC073569.3-201ENST00000619055 682 ntBASIC0.57□□□□□ -2.32
VCANP13611 RNA5SP98-201ENST00000363158 137 ntBASIC0.57□□□□□ -2.32
VCANP13611 RPS24P6-201ENST00000452670 400 ntBASIC0.57□□□□□ -2.32
VCANP13611 BLOC1S6-207ENST00000565216 573 ntTSL 3 BASIC0.57□□□□□ -2.32
VCANP13611 AC113368.1-201ENST00000603736 382 ntBASIC0.57□□□□□ -2.32
VCANP13611 Pinc.1-201ENST00000616452 154 ntBASIC0.57□□□□□ -2.32
VCANP13611 LINC01036-201ENST00000458683 858 ntTSL 3 BASIC0.56□□□□□ -2.32
VCANP13611 AC011131.1-201ENST00000521224 252 ntTSL 2 BASIC0.56□□□□□ -2.32
VCANP13611 AC140725.3-201ENST00000616193 880 ntBASIC0.56□□□□□ -2.32
VCANP13611 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
VCANP13611 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC0.56□□□□□ -2.32
VCANP13611 MIR604-201ENST00000384880 94 ntBASIC0.56□□□□□ -2.32
VCANP13611 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.56□□□□□ -2.32
VCANP13611 AP000855.1-201ENST00000433210 636 ntTSL 2 BASIC0.56□□□□□ -2.32
VCANP13611 MTND5P15-201ENST00000434246 349 ntBASIC0.56□□□□□ -2.32
VCANP13611 AC097499.1-201ENST00000444277 208 ntBASIC0.56□□□□□ -2.32
VCANP13611 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC0.56□□□□□ -2.32
VCANP13611 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC0.56□□□□□ -2.32
VCANP13611 AL031183.1-201ENST00000457667 207 ntBASIC0.56□□□□□ -2.32
VCANP13611 AC092451.1-201ENST00000480211 153 ntBASIC0.56□□□□□ -2.32
VCANP13611 AC021646.1-201ENST00000605469 484 ntBASIC0.56□□□□□ -2.32
VCANP13611 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC0.56□□□□□ -2.32
VCANP13611 Xist_exon1.1-201ENST00000618930 85 ntBASIC0.56□□□□□ -2.32
VCANP13611 AP003485.1-201ENST00000625093 753 ntBASIC0.56□□□□□ -2.32
VCANP13611 MIR5087-201ENST00000635826 76 ntBASIC0.56□□□□□ -2.32
VCANP13611 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC0.55□□□□□ -2.32
VCANP13611 RN7SKP61-201ENST00000410642 295 ntBASIC0.55□□□□□ -2.32
VCANP13611 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC0.55□□□□□ -2.32
VCANP13611 Z96811.1-201ENST00000445880 108 ntBASIC0.55□□□□□ -2.32
VCANP13611 ARPC3P2-201ENST00000457786 533 ntBASIC0.55□□□□□ -2.32
VCANP13611 AC010285.1-201ENST00000470580 392 ntBASIC0.55□□□□□ -2.32
VCANP13611 MS4A1-205ENST00000528313 928 ntTSL 2 BASIC0.55□□□□□ -2.32
VCANP13611 AC006461.1-201ENST00000412637 326 ntBASIC0.55□□□□□ -2.32
VCANP13611 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.55□□□□□ -2.32
VCANP13611 SUB1P1-201ENST00000524415 382 ntBASIC0.55□□□□□ -2.32
VCANP13611 RPS15AP11-201ENST00000594193 385 ntBASIC0.55□□□□□ -2.32
VCANP13611 AC079597.1-201ENST00000624306 508 ntBASIC0.55□□□□□ -2.32
VCANP13611 TSHB-201ENST00000256592 537 ntAPPRIS P1 TSL 5 BASIC0.54□□□□□ -2.32
VCANP13611 Y_RNA.559-201ENST00000384686 107 ntBASIC0.54□□□□□ -2.32
VCANP13611 RPL31P52-201ENST00000407532 367 ntBASIC0.54□□□□□ -2.32
VCANP13611 HMGB3P17-201ENST00000504195 649 ntBASIC0.54□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 121.3 ms