Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AP000936.2-201ENST00000447151 681 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 DPPA3P1-201ENST00000448050 469 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 SNRPG-206ENST00000454893 527 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 AC013267.1-201ENST00000458227 267 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 AP000852.1-201ENST00000472460 573 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 RNA5SP471-201ENST00000516971 106 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 RNA5SP290-201ENST00000517133 127 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 AC022634.1-201ENST00000520765 532 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 SUB1P1-201ENST00000524415 382 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 AC023050.2-201ENST00000544968 387 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 AC093012.1-202ENST00000549403 582 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 AC025281.1-201ENST00000567026 265 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 MIR3117-201ENST00000584034 78 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 DPPA3P3-201ENST00000603842 430 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 AC091965.4-201ENST00000607691 587 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 AL359962.2-201ENST00000610044 303 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 UBE2Q2P2-203ENST00000613592 761 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 AC091965.5-201ENST00000624785 342 ntBASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 DLD-214ENST00000639772 421 ntTSL 5 BASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.78□□□□□ -1.96
CCDC40Q4G0X9 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 RNU6-7-201ENST00000364784 107 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 Y_RNA.302-201ENST00000364997 102 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 RNU6-8-201ENST00000365467 107 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AL139039.1-201ENST00000401900 692 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AL162578.1-201ENST00000406202 378 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 VPS26BP1-201ENST00000417155 755 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 USP9YP13-201ENST00000417797 480 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AL157786.1-206ENST00000424422 551 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 MTND1P20-201ENST00000430341 950 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AL445687.1-201ENST00000439946 251 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AL606517.1-201ENST00000446914 387 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 DNM3-IT1-201ENST00000450800 396 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 RPL26P9-201ENST00000457466 433 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 SNORD11.1-201ENST00000459482 85 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AC097462.2-201ENST00000504623 481 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 RNU6-64P-201ENST00000517119 105 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AP000907.2-201ENST00000530827 353 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AC106782.4-201ENST00000568264 210 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AC009163.5-201ENST00000575421 637 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 MIR5194-201ENST00000582634 120 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 RPL12P50-201ENST00000603116 116 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AL049779.4-201ENST00000604500 156 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AC013244.3-201ENST00000605614 388 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 TUSC7.1-201ENST00000610969 165 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AL391262.2-201ENST00000622466 494 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 AL136313.1-201ENST00000624804 202 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 FO624990.1-201ENST00000636373 85 ntBASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 LIPI-203ENST00000536861 1529 ntAPPRIS ALT2 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC40Q4G0X9 PAPPA-AS1-201ENST00000445861 2450 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 PPIL4-202ENST00000340881 1089 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 RNU6-1200P-201ENST00000384162 107 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 AL139397.2-201ENST00000404529 772 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 AC006150.1-201ENST00000412014 263 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 AC023141.4-201ENST00000412031 328 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 SNRPEP9-201ENST00000436794 238 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 AL831737.1-201ENST00000441288 271 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 Z73417.1-201ENST00000447373 778 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 OR6C5P-201ENST00000452388 923 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 AC008716.1-201ENST00000511084 513 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 TAS2R43-201ENST00000531678 1027 ntAPPRIS P1 BASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 G2E3-AS1-202ENST00000550118 609 ntTSL 5 BASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 AL359212.1-201ENST00000556608 614 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 AL354943.1-201ENST00000572103 781 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 MIR4293-201ENST00000584305 78 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 AC105148.1-201ENST00000604961 409 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 AC004805.2-201ENST00000605382 482 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 AL355472.4-201ENST00000610233 626 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 AL137847.3-201ENST00000611521 109 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 MIR7106-201ENST00000612419 65 ntBASIC2.76□□□□□ -1.97
CCDC40Q4G0X9 AL050303.3-201ENST00000613704 284 ntBASIC2.76□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms