Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC112204.1-201ENST00000502591 103 ntBASIC2.56□□□□□ -2
SDC1P18827 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC2.56□□□□□ -2
SDC1P18827 OR5BM1P-201ENST00000512021 366 ntBASIC2.56□□□□□ -2
SDC1P18827 AC114797.1-201ENST00000514003 728 ntBASIC2.56□□□□□ -2
SDC1P18827 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC2.56□□□□□ -2
SDC1P18827 AC107934.1-201ENST00000522215 217 ntBASIC2.56□□□□□ -2
SDC1P18827 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC2.56□□□□□ -2
SDC1P18827 DNAJC8P1-201ENST00000554535 372 ntBASIC2.56□□□□□ -2
SDC1P18827 AC068135.2-201ENST00000569293 1028 ntBASIC2.56□□□□□ -2
SDC1P18827 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC2.56□□□□□ -2
SDC1P18827 MIR4635-201ENST00000583759 79 ntBASIC2.56□□□□□ -2
SDC1P18827 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.56□□□□□ -2
SDC1P18827 GALNT1-205ENST00000591081 1120 ntTSL 1 (best) BASIC2.56□□□□□ -2
SDC1P18827 KC877982.1-201ENST00000602313 470 ntBASIC2.56□□□□□ -2
SDC1P18827 U73023.1-201ENST00000603134 700 ntBASIC2.56□□□□□ -2
SDC1P18827 AP001981.2-201ENST00000603241 418 ntBASIC2.56□□□□□ -2
SDC1P18827 AC092354.1-201ENST00000606057 376 ntBASIC2.56□□□□□ -2
SDC1P18827 AC090970.3-201ENST00000612566 866 ntBASIC2.56□□□□□ -2
SDC1P18827 AC027807.2-201ENST00000616099 408 ntBASIC2.56□□□□□ -2
SDC1P18827 AC068057.2-201ENST00000624047 895 ntBASIC2.56□□□□□ -2
SDC1P18827 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.56□□□□□ -2
SDC1P18827 ATP8A2P3-201ENST00000426792 1536 ntBASIC2.56□□□□□ -2
SDC1P18827 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC2.56□□□□□ -2
SDC1P18827 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.55□□□□□ -2
SDC1P18827 CD24P4-201ENST00000382840 243 ntBASIC2.55□□□□□ -2
SDC1P18827 SNORD115.1-201ENST00000391109 76 ntBASIC2.55□□□□□ -2
SDC1P18827 RNA5SP21-201ENST00000410917 96 ntBASIC2.55□□□□□ -2
SDC1P18827 AC007463.1-201ENST00000416534 734 ntTSL 3 BASIC2.55□□□□□ -2
SDC1P18827 AC244035.1-201ENST00000430042 390 ntBASIC2.55□□□□□ -2
SDC1P18827 FCF1P1-201ENST00000432690 571 ntBASIC2.55□□□□□ -2
SDC1P18827 AC010153.1-201ENST00000432862 727 ntBASIC2.55□□□□□ -2
SDC1P18827 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC2.55□□□□□ -2
SDC1P18827 MTND1P26-201ENST00000440488 538 ntBASIC2.55□□□□□ -2
SDC1P18827 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC2.55□□□□□ -2
SDC1P18827 AL589684.1-201ENST00000445974 507 ntTSL 3 BASIC2.55□□□□□ -2
SDC1P18827 AC114485.1-201ENST00000447916 657 ntTSL 3 BASIC2.55□□□□□ -2
SDC1P18827 NANOGNBP1-201ENST00000448444 480 ntBASIC2.55□□□□□ -2
SDC1P18827 CACYBPP2-201ENST00000453625 678 ntBASIC2.55□□□□□ -2
SDC1P18827 LINC02377-201ENST00000500169 450 ntTSL 3 BASIC2.55□□□□□ -2
SDC1P18827 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC2.55□□□□□ -2
SDC1P18827 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC2.55□□□□□ -2
SDC1P18827 MTND5P13-201ENST00000513046 1079 ntBASIC2.55□□□□□ -2
SDC1P18827 PKIA-203ENST00000518467 588 ntAPPRIS P1 TSL 1 (best) BASIC2.55□□□□□ -2
SDC1P18827 AC011611.4-201ENST00000547721 779 ntTSL 2 BASIC2.55□□□□□ -2
SDC1P18827 AC093012.1-202ENST00000549403 582 ntBASIC2.55□□□□□ -2
SDC1P18827 AC079600.2-201ENST00000550076 130 ntBASIC2.55□□□□□ -2
SDC1P18827 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.55□□□□□ -2
SDC1P18827 AC090607.4-201ENST00000558192 369 ntTSL 3 BASIC2.55□□□□□ -2
SDC1P18827 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC2.55□□□□□ -2
SDC1P18827 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC2.55□□□□□ -2
SDC1P18827 NUTF2P8-201ENST00000604593 363 ntBASIC2.55□□□□□ -2
SDC1P18827 AC093732.2-201ENST00000607950 274 ntBASIC2.55□□□□□ -2
SDC1P18827 AC103710.1-201ENST00000610003 901 ntBASIC2.55□□□□□ -2
SDC1P18827 BX664608.1-201ENST00000610519 487 ntBASIC2.55□□□□□ -2
SDC1P18827 AL392048.1-201ENST00000613946 534 ntBASIC2.55□□□□□ -2
SDC1P18827 AC073346.2-201ENST00000624724 2058 ntBASIC2.55□□□□□ -2
SDC1P18827 AC010149.2-201ENST00000637608 315 ntBASIC2.55□□□□□ -2
SDC1P18827 AC010680.1-201ENST00000590024 3590 ntBASIC2.55□□□□□ -2
SDC1P18827 ZNF833P-201ENST00000424938 1494 ntBASIC2.54□□□□□ -2
SDC1P18827 APOH-201ENST00000205948 1176 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
SDC1P18827 RNY4P16-201ENST00000364768 94 ntBASIC2.54□□□□□ -2
SDC1P18827 RNY3P13-201ENST00000365542 102 ntBASIC2.54□□□□□ -2
SDC1P18827 RNU6-217P-201ENST00000384164 104 ntBASIC2.54□□□□□ -2
SDC1P18827 RNU6-198P-201ENST00000384258 104 ntBASIC2.54□□□□□ -2
SDC1P18827 RNU6-278P-201ENST00000390945 109 ntBASIC2.54□□□□□ -2
SDC1P18827 AL139397.2-201ENST00000404529 772 ntBASIC2.54□□□□□ -2
SDC1P18827 SNORA11-201ENST00000408789 128 ntBASIC2.54□□□□□ -2
SDC1P18827 Y_RNA.608-201ENST00000410647 95 ntBASIC2.54□□□□□ -2
SDC1P18827 RPL19P1-201ENST00000411635 428 ntBASIC2.54□□□□□ -2
SDC1P18827 AC019064.1-201ENST00000414796 499 ntTSL 2 BASIC2.54□□□□□ -2
SDC1P18827 MTND2P18-201ENST00000419962 1030 ntBASIC2.54□□□□□ -2
SDC1P18827 AC099548.1-201ENST00000421443 426 ntBASIC2.54□□□□□ -2
SDC1P18827 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC2.54□□□□□ -2
SDC1P18827 AC114808.2-201ENST00000428335 536 ntTSL 4 BASIC2.54□□□□□ -2
SDC1P18827 AC087499.2-201ENST00000432861 149 ntBASIC2.54□□□□□ -2
SDC1P18827 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC2.54□□□□□ -2
SDC1P18827 MTND1P30-201ENST00000441241 901 ntBASIC2.54□□□□□ -2
SDC1P18827 DDX3P2-201ENST00000446138 111 ntBASIC2.54□□□□□ -2
SDC1P18827 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC2.54□□□□□ -2
SDC1P18827 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC2.54□□□□□ -2
SDC1P18827 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC2.54□□□□□ -2
SDC1P18827 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC2.54□□□□□ -2
SDC1P18827 S100A11P2-201ENST00000467589 312 ntBASIC2.54□□□□□ -2
SDC1P18827 RPF2P2-201ENST00000504693 896 ntBASIC2.54□□□□□ -2
SDC1P18827 SLC25A15P5-201ENST00000508033 253 ntBASIC2.54□□□□□ -2
SDC1P18827 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.54□□□□□ -2
SDC1P18827 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.54□□□□□ -2
SDC1P18827 AC106895.1-201ENST00000515825 548 ntTSL 4 BASIC2.54□□□□□ -2
SDC1P18827 RNU6-927P-201ENST00000516199 100 ntBASIC2.54□□□□□ -2
SDC1P18827 RNU6-826P-201ENST00000516827 104 ntBASIC2.54□□□□□ -2
SDC1P18827 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC2.54□□□□□ -2
SDC1P18827 AC012379.1-201ENST00000558304 406 ntTSL 3 BASIC2.54□□□□□ -2
SDC1P18827 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC2.54□□□□□ -2
SDC1P18827 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC2.54□□□□□ -2
SDC1P18827 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC2.54□□□□□ -2
SDC1P18827 MIR3118-1-201ENST00000581787 76 ntBASIC2.54□□□□□ -2
SDC1P18827 AC099566.1-211ENST00000595188 737 ntTSL 5 BASIC2.54□□□□□ -2
SDC1P18827 DUXAP4-201ENST00000603046 613 ntBASIC2.54□□□□□ -2
SDC1P18827 AC079089.3-201ENST00000603094 673 ntBASIC2.54□□□□□ -2
SDC1P18827 AP000860.1-201ENST00000605250 559 ntBASIC2.54□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms