Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Scn11aQ9R053 Ctcflos-201ENSMUST00000142165 469 ntTSL 3 BASIC19.17■□□□□ 0.66
Scn11aQ9R053 Nudt6-208ENSMUST00000146324 1264 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Scn11aQ9R053 Gm26308-201ENSMUST00000157768 69 ntBASIC19.17■□□□□ 0.66
Scn11aQ9R053 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn11aQ9R053 D1Ertd622e-204ENSMUST00000153115 3495 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn11aQ9R053 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn11aQ9R053 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
Scn11aQ9R053 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn11aQ9R053 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn11aQ9R053 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn11aQ9R053 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC19.17■□□□□ 0.66
Scn11aQ9R053 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Ffar2-203ENSMUST00000168528 1210 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 AC093926.2-201ENSMUST00000214468 1228 ntBASIC19.16■□□□□ 0.66
Scn11aQ9R053 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Krt84-201ENSMUST00000023720 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Brd1-203ENSMUST00000109381 4886 ntTSL 5 BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Rbm12b2-202ENSMUST00000095143 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC19.16■□□□□ 0.66
Scn11aQ9R053 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 AC158538.2-201ENSMUST00000225455 906 ntBASIC19.16■□□□□ 0.66
Scn11aQ9R053 Aga-201ENSMUST00000033920 1181 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Scn11aQ9R053 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn11aQ9R053 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn11aQ9R053 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC19.15■□□□□ 0.66
Scn11aQ9R053 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Scn11aQ9R053 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Scn11aQ9R053 Gm18622-201ENSMUST00000219361 595 ntBASIC19.15■□□□□ 0.66
Scn11aQ9R053 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Scn11aQ9R053 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Scn11aQ9R053 Pomgnt2-206ENSMUST00000216669 2504 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Scn11aQ9R053 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC19.14■□□□□ 0.66
Scn11aQ9R053 H2-Bl-211ENSMUST00000195838 1105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Scn11aQ9R053 Chchd1-203ENSMUST00000224633 557 ntBASIC19.14■□□□□ 0.66
Scn11aQ9R053 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Scn11aQ9R053 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Scn11aQ9R053 Gm16976-202ENSMUST00000127408 1515 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Scn11aQ9R053 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
Scn11aQ9R053 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Scn11aQ9R053 Hnrnpa1-202ENSMUST00000087351 1759 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Scn11aQ9R053 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Scn11aQ9R053 Kctd10-201ENSMUST00000001125 1026 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
Scn11aQ9R053 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Scn11aQ9R053 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Scn11aQ9R053 B4galt7-201ENSMUST00000064701 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Scn11aQ9R053 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Scn11aQ9R053 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Scn11aQ9R053 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Scn11aQ9R053 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Scn11aQ9R053 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Scn11aQ9R053 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Scn11aQ9R053 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC19.13■□□□□ 0.65
Scn11aQ9R053 Gm38708-201ENSMUST00000203855 677 ntTSL 5 BASIC19.13■□□□□ 0.65
Scn11aQ9R053 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Scn11aQ9R053 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Scn11aQ9R053 Cldn11-201ENSMUST00000046174 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Scn11aQ9R053 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Scn11aQ9R053 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Scn11aQ9R053 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
Scn11aQ9R053 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Scn11aQ9R053 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn11aQ9R053 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn11aQ9R053 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn11aQ9R053 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn11aQ9R053 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn11aQ9R053 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn11aQ9R053 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn11aQ9R053 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC19.12■□□□□ 0.65
Scn11aQ9R053 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn11aQ9R053 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC19.12■□□□□ 0.65
Scn11aQ9R053 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC19.12■□□□□ 0.65
Scn11aQ9R053 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
Scn11aQ9R053 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn11aQ9R053 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Scn11aQ9R053 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn11aQ9R053 Anp32a-201ENSMUST00000085519 2113 ntAPPRIS P2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn11aQ9R053 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn11aQ9R053 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn11aQ9R053 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Scn11aQ9R053 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Scn11aQ9R053 Gm26854-201ENSMUST00000180418 705 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Scn11aQ9R053 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Scn11aQ9R053 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC19.11■□□□□ 0.65
Scn11aQ9R053 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC19.11■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms