Protein–RNA interactions for Protein: Q9EPU0

Upf1, Regulator of nonsense transcripts 1, mousemouse

Known RBP Predictions only

Length 1,124 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf1Q9EPU0 Mlf1-202ENSMUST00000077916 1114 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf1Q9EPU0 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC18.41■□□□□ 0.54
Upf1Q9EPU0 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf1Q9EPU0 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC18.41■□□□□ 0.54
Upf1Q9EPU0 Lca5l-201ENSMUST00000054855 2508 ntAPPRIS P2 TSL 1 (best) BASIC18.41■□□□□ 0.54
Upf1Q9EPU0 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Ighv5-17-201ENSMUST00000103459 405 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Crybb3-202ENSMUST00000117143 749 ntAPPRIS P1 TSL 3 BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Gm14719-201ENSMUST00000121891 340 ntBASIC18.4■□□□□ 0.54
Upf1Q9EPU0 C8g-201ENSMUST00000015227 822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Pcgf1-202ENSMUST00000165164 918 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Gm6473-201ENSMUST00000188572 1210 ntBASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Klrg2-202ENSMUST00000201345 1225 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 AC159635.2-201ENSMUST00000223092 817 ntTSL 5 BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
Upf1Q9EPU0 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC18.39■□□□□ 0.54
Upf1Q9EPU0 Zcchc24-201ENSMUST00000069180 4556 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
Upf1Q9EPU0 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
Upf1Q9EPU0 Metrnl-202ENSMUST00000106089 1101 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
Upf1Q9EPU0 Gm12017-201ENSMUST00000122453 1003 ntBASIC18.39■□□□□ 0.53
Upf1Q9EPU0 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC18.39■□□□□ 0.53
Upf1Q9EPU0 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Upf1Q9EPU0 Gm6888-201ENSMUST00000221983 706 ntBASIC18.39■□□□□ 0.53
Upf1Q9EPU0 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
Upf1Q9EPU0 Tmem116-202ENSMUST00000060004 1297 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf1Q9EPU0 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf1Q9EPU0 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf1Q9EPU0 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf1Q9EPU0 Rcn3-208ENSMUST00000211352 1453 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf1Q9EPU0 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf1Q9EPU0 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
Upf1Q9EPU0 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Upf1Q9EPU0 B4galt3-205ENSMUST00000126699 1758 ntTSL 5 BASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Serpinf1-202ENSMUST00000125982 605 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Gm8602-201ENSMUST00000184045 607 ntBASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Ighv5-13-201ENSMUST00000193550 290 ntBASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Armc12-201ENSMUST00000025060 1083 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Syt7-204ENSMUST00000223586 1344 ntBASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Lrrc43-202ENSMUST00000121444 2016 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Sfrp2-201ENSMUST00000029625 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
Upf1Q9EPU0 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Actg1-202ENSMUST00000071555 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Slc22a12-201ENSMUST00000113451 2213 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Gm9385-201ENSMUST00000117563 472 ntBASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Gm14206-201ENSMUST00000132973 747 ntTSL 3 BASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Commd6-203ENSMUST00000168587 519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Gm20509-201ENSMUST00000174203 1016 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Gm20033-203ENSMUST00000180912 796 ntTSL 5 BASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Gm6745-201ENSMUST00000199216 526 ntBASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Gm13410-201ENSMUST00000117058 1415 ntBASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Cnpy1-202ENSMUST00000118882 1984 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Celf3-208ENSMUST00000198316 2505 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
Upf1Q9EPU0 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Upf1Q9EPU0 Bend6-202ENSMUST00000115161 2231 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Upf1Q9EPU0 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC18.36■□□□□ 0.53
Upf1Q9EPU0 Gm27164-201ENSMUST00000184359 723 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
Upf1Q9EPU0 Gm5149-201ENSMUST00000199768 620 ntTSL 3 BASIC18.36■□□□□ 0.53
Upf1Q9EPU0 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC18.36■□□□□ 0.53
Upf1Q9EPU0 Gm3365-201ENSMUST00000216296 1480 ntBASIC18.36■□□□□ 0.53
Upf1Q9EPU0 Rbfox2-208ENSMUST00000227930 1218 ntBASIC18.36■□□□□ 0.53
Upf1Q9EPU0 Kifc3-201ENSMUST00000034240 3277 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
Upf1Q9EPU0 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
Upf1Q9EPU0 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf1Q9EPU0 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf1Q9EPU0 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf1Q9EPU0 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf1Q9EPU0 Yipf2-201ENSMUST00000034700 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf1Q9EPU0 AL590614.2-201ENSMUST00000225374 1937 ntBASIC18.35■□□□□ 0.53
Upf1Q9EPU0 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf1Q9EPU0 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Upf1Q9EPU0 Slc22a18-201ENSMUST00000052348 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms