Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Tnks-201ENSMUST00000033929 9163 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Gm26774-201ENSMUST00000181534 2401 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Mag-203ENSMUST00000187137 2434 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Gm16759-204ENSMUST00000191455 4272 ntTSL 5 BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Zkscan4-202ENSMUST00000225845 1506 ntBASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 1700025L06Rik-203ENSMUST00000211477 1623 ntTSL 5 BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 Ngly1-201ENSMUST00000022310 2935 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
Ddx56Q9D0R4 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ddx56Q9D0R4 Gm1043-204ENSMUST00000207866 4296 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Ddx56Q9D0R4 Mepce-201ENSMUST00000031740 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ddx56Q9D0R4 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
Ddx56Q9D0R4 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.33
Ddx56Q9D0R4 Neurl1a-202ENSMUST00000111808 4157 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ddx56Q9D0R4 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ddx56Q9D0R4 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC17.08■□□□□ 0.32
Ddx56Q9D0R4 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Ddx56Q9D0R4 Hist1h2aj-201ENSMUST00000091710 352 ntBASIC17.08■□□□□ 0.32
Ddx56Q9D0R4 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ddx56Q9D0R4 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ddx56Q9D0R4 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
Ddx56Q9D0R4 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ddx56Q9D0R4 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC17.08■□□□□ 0.32
Ddx56Q9D0R4 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ddx56Q9D0R4 Tuba8-201ENSMUST00000032233 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ddx56Q9D0R4 1810041L15Rik-203ENSMUST00000189248 5296 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Ddx56Q9D0R4 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Ddx56Q9D0R4 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
Ddx56Q9D0R4 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
Ddx56Q9D0R4 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Pskh1-201ENSMUST00000049699 3255 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Gm10052-201ENSMUST00000168019 960 ntBASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Gm6623-201ENSMUST00000173570 544 ntBASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Arl5b-206ENSMUST00000193836 481 ntTSL 2 BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Gm7729-201ENSMUST00000050143 801 ntBASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Acvr2a-201ENSMUST00000063886 5686 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
Ddx56Q9D0R4 Rassf7-208ENSMUST00000209500 1560 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Slc27a1-207ENSMUST00000212889 2730 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Chic2-201ENSMUST00000075452 9699 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Gm8258-201ENSMUST00000055593 1449 ntBASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Akp-ps1-202ENSMUST00000212812 1959 ntTSL 5 BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Sgsm2-202ENSMUST00000081799 4873 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Gm6659-201ENSMUST00000174752 547 ntBASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Gm44430-201ENSMUST00000203376 995 ntBASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Tmem128-201ENSMUST00000087511 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Ddx51-201ENSMUST00000031478 4846 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Mtmr12-201ENSMUST00000038172 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Tgfb2-201ENSMUST00000045288 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Tspyl2-201ENSMUST00000044509 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Sphk1-201ENSMUST00000063396 2659 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Taok3-202ENSMUST00000111975 2172 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Slc30a10-201ENSMUST00000061093 5836 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
Ddx56Q9D0R4 Prdm12-201ENSMUST00000113470 2471 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 62.1 ms