Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Nsun5-201ENSMUST00000000940 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Nr1h2-204ENSMUST00000107912 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Ephb4-201ENSMUST00000061244 4340 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Slc43a1-202ENSMUST00000111624 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC18.16■□□□□ 0.5
Smc1aQ9CU62 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Mms22l-202ENSMUST00000108222 4478 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Ttc13-203ENSMUST00000118134 3277 ntTSL 5 BASIC18.16■□□□□ 0.5
Smc1aQ9CU62 Gm16499-203ENSMUST00000204633 2177 ntBASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 G3bp2-204ENSMUST00000169094 2716 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Pgm2l1-202ENSMUST00000084935 8834 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Fam160a2-203ENSMUST00000118726 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Gramd3-201ENSMUST00000070166 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 AW011738-201ENSMUST00000105140 1848 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Gm11950-201ENSMUST00000121615 838 ntBASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Fxyd5-208ENSMUST00000161805 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Yipf4-201ENSMUST00000024873 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Git2-215ENSMUST00000178440 4944 ntTSL 5 BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Git2-201ENSMUST00000043283 4938 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Mdga1-208ENSMUST00000171691 8339 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Ern1-204ENSMUST00000106801 1957 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Atg5-201ENSMUST00000039286 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Smc1aQ9CU62 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Fscn1-207ENSMUST00000198017 2157 ntTSL 5 BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Mn1-201ENSMUST00000094463 6860 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Ddx50-201ENSMUST00000020270 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Pafah1b3-201ENSMUST00000005583 901 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Med18-201ENSMUST00000102567 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Pagr1a-202ENSMUST00000200948 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Gm42742-205ENSMUST00000202798 1412 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Ptpdc1-201ENSMUST00000035824 4402 ntAPPRIS P2 TSL 1 (best) BASIC18.14■□□□□ 0.49
Smc1aQ9CU62 Aurkb-201ENSMUST00000021277 1950 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Gm16861-201ENSMUST00000181498 1647 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Dph1-201ENSMUST00000044949 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Carmn-201ENSMUST00000181155 1778 ntTSL 2 BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Gm7153-201ENSMUST00000117092 455 ntBASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Flt1-203ENSMUST00000110529 6292 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Prtg-201ENSMUST00000055535 9148 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
Smc1aQ9CU62 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 Kcnk4-201ENSMUST00000025908 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 Tmc6-202ENSMUST00000103025 1279 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
Smc1aQ9CU62 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC18.12■□□□□ 0.49
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms