Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC22.22■■□□□ 1.15
Usp40Q8BWR4 Gm11532-201ENSMUST00000128111 5272 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Usp40Q8BWR4 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Usp40Q8BWR4 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
Usp40Q8BWR4 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Usp40Q8BWR4 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC22.22■■□□□ 1.15
Usp40Q8BWR4 Ddn-201ENSMUST00000075444 3740 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Usp40Q8BWR4 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Usp40Q8BWR4 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Usp40Q8BWR4 AC154222.1-201ENSMUST00000223882 475 ntBASIC22.22■■□□□ 1.15
Usp40Q8BWR4 Rmnd1-201ENSMUST00000042251 3139 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Usp40Q8BWR4 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC22.22■■□□□ 1.15
Usp40Q8BWR4 Gm3928-201ENSMUST00000121141 1307 ntBASIC22.22■■□□□ 1.15
Usp40Q8BWR4 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC22.22■■□□□ 1.15
Usp40Q8BWR4 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Usp40Q8BWR4 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Usp40Q8BWR4 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
Usp40Q8BWR4 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC22.22■■□□□ 1.15
Usp40Q8BWR4 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Gnaz-201ENSMUST00000037813 3519 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Gm13036-201ENSMUST00000117799 748 ntBASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Gm15492-201ENSMUST00000156734 606 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Gm27628-201ENSMUST00000184911 107 ntBASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 A230072C01Rik-202ENSMUST00000136447 1412 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Rev1-201ENSMUST00000027251 4262 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
Usp40Q8BWR4 Lrrc47-201ENSMUST00000030894 3395 ntAPPRIS P2 TSL 1 (best) BASIC22.2■■□□□ 1.14
Usp40Q8BWR4 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Usp40Q8BWR4 Gm8000-201ENSMUST00000188378 592 ntBASIC22.2■■□□□ 1.14
Usp40Q8BWR4 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Usp40Q8BWR4 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Usp40Q8BWR4 Nrxn2-204ENSMUST00000113461 5505 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
Usp40Q8BWR4 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Usp40Q8BWR4 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Usp40Q8BWR4 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Usp40Q8BWR4 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC22.2■■□□□ 1.14
Usp40Q8BWR4 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
Usp40Q8BWR4 Piezo2-201ENSMUST00000046860 2849 ntTSL 5 BASIC22.2■■□□□ 1.14
Usp40Q8BWR4 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm4609-201ENSMUST00000106443 1002 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm5138-201ENSMUST00000113842 1002 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm15191-201ENSMUST00000117933 1000 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm12182-201ENSMUST00000118655 1008 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm13882-201ENSMUST00000120886 1002 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm10284-201ENSMUST00000145057 1005 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm10481-201ENSMUST00000179228 1002 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm2574-201ENSMUST00000181051 1002 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm3200-201ENSMUST00000181493 1002 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm8825-201ENSMUST00000182565 998 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm4518-201ENSMUST00000182638 718 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm8330-201ENSMUST00000182754 1008 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm4575-201ENSMUST00000182991 1002 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm8709-201ENSMUST00000183230 1012 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Cela3a-201ENSMUST00000024200 958 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm10293-201ENSMUST00000076317 1002 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm6316-201ENSMUST00000082064 1020 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Gm8784-201ENSMUST00000222096 1435 ntBASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Il4i1-202ENSMUST00000118125 2275 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
Usp40Q8BWR4 Kcnq2-205ENSMUST00000103048 2827 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Usp40Q8BWR4 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp40Q8BWR4 Stxbp3-205ENSMUST00000138552 1789 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
Usp40Q8BWR4 Tmem267-205ENSMUST00000223912 1789 ntAPPRIS P1 BASIC22.18■■□□□ 1.14
Usp40Q8BWR4 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp40Q8BWR4 Gm37935-201ENSMUST00000192012 982 ntBASIC22.18■■□□□ 1.14
Usp40Q8BWR4 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC22.18■■□□□ 1.14
Usp40Q8BWR4 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp40Q8BWR4 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp40Q8BWR4 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp40Q8BWR4 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC22.18■■□□□ 1.14
Usp40Q8BWR4 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp40Q8BWR4 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp40Q8BWR4 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp40Q8BWR4 Gm10461-201ENSMUST00000202073 4786 ntBASIC22.18■■□□□ 1.14
Usp40Q8BWR4 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
Usp40Q8BWR4 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Usp40Q8BWR4 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Usp40Q8BWR4 Mis18a-201ENSMUST00000099554 1333 ntAPPRIS P1 TSL 1 (best) BASIC22.17■■□□□ 1.14
Usp40Q8BWR4 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC22.17■■□□□ 1.14
Retrieved 100 of 76,532 protein–RNA pairs in 22.7 ms