Protein–RNA interactions for Protein: Q80TE0

Rpap1, RNA polymerase II-associated protein 1, mousemouse

Predictions only

Length 1,409 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpap1Q80TE0 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Rpap1Q80TE0 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
Rpap1Q80TE0 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Rpap1Q80TE0 Emg1-201ENSMUST00000004379 1034 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Rpap1Q80TE0 Rnase10-202ENSMUST00000164632 1521 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
Rpap1Q80TE0 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Rpap1Q80TE0 Csnk1e-201ENSMUST00000117786 2694 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Rpap1Q80TE0 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC25.06■■□□□ 1.6
Rpap1Q80TE0 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
Rpap1Q80TE0 Elp6-205ENSMUST00000199592 1304 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 0610025J13Rik-201ENSMUST00000131324 652 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Timm9-202ENSMUST00000166120 990 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Gm44872-201ENSMUST00000207864 420 ntBASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Gm34397-203ENSMUST00000214991 630 ntTSL 5 BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Timm9-207ENSMUST00000221559 718 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Timm9-209ENSMUST00000221815 1193 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Cmtm8-201ENSMUST00000047013 1064 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Cdkn2d-201ENSMUST00000086374 1264 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Pex11a-201ENSMUST00000032761 2241 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Vegfa-201ENSMUST00000024747 2765 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Dnm1-216ENSMUST00000201494 2732 ntTSL 5 BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC25.05■■□□□ 1.6
Rpap1Q80TE0 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Rpap1Q80TE0 Gm15358-201ENSMUST00000119249 520 ntBASIC25.04■■□□□ 1.6
Rpap1Q80TE0 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
Rpap1Q80TE0 Gm30684-201ENSMUST00000205632 600 ntTSL 3 BASIC25.04■■□□□ 1.6
Rpap1Q80TE0 Npb-201ENSMUST00000061309 418 ntTSL 3 BASIC25.04■■□□□ 1.6
Rpap1Q80TE0 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Rpap1Q80TE0 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Rpap1Q80TE0 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Rpap1Q80TE0 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Rpap1Q80TE0 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC25.04■■□□□ 1.6
Rpap1Q80TE0 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
Rpap1Q80TE0 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Rpap1Q80TE0 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
Rpap1Q80TE0 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
Rpap1Q80TE0 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
Rpap1Q80TE0 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC25.03■■□□□ 1.6
Rpap1Q80TE0 AC139382.1-201ENSMUST00000221402 498 ntBASIC25.03■■□□□ 1.6
Rpap1Q80TE0 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC25.03■■□□□ 1.6
Rpap1Q80TE0 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
Rpap1Q80TE0 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC25.03■■□□□ 1.6
Rpap1Q80TE0 Gm19439-201ENSMUST00000198195 2273 ntBASIC25.03■■□□□ 1.6
Rpap1Q80TE0 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC25.03■■□□□ 1.6
Rpap1Q80TE0 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Rpap1Q80TE0 Cep250-203ENSMUST00000109618 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
Rpap1Q80TE0 Gm13616-201ENSMUST00000120600 222 ntBASIC25.03■■□□□ 1.6
Rpap1Q80TE0 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC25.03■■□□□ 1.6
Rpap1Q80TE0 Gm37171-201ENSMUST00000192636 1185 ntBASIC25.03■■□□□ 1.6
Rpap1Q80TE0 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Rpap1Q80TE0 Immp2l-201ENSMUST00000080160 239 ntTSL 3 BASIC25.03■■□□□ 1.6
Rpap1Q80TE0 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Arhgef16-201ENSMUST00000030898 2860 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Gm11185-201ENSMUST00000117732 1007 ntBASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Msrb2-201ENSMUST00000023856 1196 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Klk15-201ENSMUST00000068625 845 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Gsdmcl1-201ENSMUST00000071847 1133 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Zbtb48-201ENSMUST00000066715 2218 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Rpap1Q80TE0 Tmed1-201ENSMUST00000034698 1378 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Rpap1Q80TE0 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Rpap1Q80TE0 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Rpap1Q80TE0 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC25.01■■□□□ 1.59
Rpap1Q80TE0 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Rpap1Q80TE0 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC25.01■■□□□ 1.59
Rpap1Q80TE0 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
Rpap1Q80TE0 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC25.01■■□□□ 1.59
Rpap1Q80TE0 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
Rpap1Q80TE0 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC25.01■■□□□ 1.59
Rpap1Q80TE0 Smtnl1-201ENSMUST00000028471 1761 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Rpap1Q80TE0 Nfe2-208ENSMUST00000149111 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Rpap1Q80TE0 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
Rpap1Q80TE0 Mettl16-201ENSMUST00000010698 2073 ntTSL 1 (best) BASIC25■■□□□ 1.59
Rpap1Q80TE0 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC25■■□□□ 1.59
Rpap1Q80TE0 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
Retrieved 100 of 76,532 protein–RNA pairs in 34.6 ms