Protein–RNA interactions for Protein: Q5SNZ0

Ccdc88a, Girdin, mousemouse

Predictions only

Length 1,873 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88aQ5SNZ0 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Bicdl1-201ENSMUST00000055408 3026 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Layn-204ENSMUST00000217212 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Tekt1-202ENSMUST00000108502 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Gm8097-201ENSMUST00000117903 829 ntBASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Gm4535-201ENSMUST00000182274 558 ntBASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Rangrf-201ENSMUST00000038644 820 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Gm10355-201ENSMUST00000097146 517 ntBASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC18.6■□□□□ 0.57
Ccdc88aQ5SNZ0 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Nup188-205ENSMUST00000138666 534 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Gm25406-201ENSMUST00000157599 105 ntBASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Ndufaf2-202ENSMUST00000223734 556 ntBASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Akap8l-201ENSMUST00000050214 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Plppr3-207ENSMUST00000167250 3063 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Gm13127-201ENSMUST00000118978 1389 ntBASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Znrf1-201ENSMUST00000095176 3108 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Map2k5-201ENSMUST00000034920 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Ccdc88aQ5SNZ0 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
Ccdc88aQ5SNZ0 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Ccdc88aQ5SNZ0 Jpx-202ENSMUST00000182447 712 ntTSL 3 BASIC18.58■□□□□ 0.57
Ccdc88aQ5SNZ0 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC18.58■□□□□ 0.57
Ccdc88aQ5SNZ0 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC18.58■□□□□ 0.57
Ccdc88aQ5SNZ0 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC18.58■□□□□ 0.57
Ccdc88aQ5SNZ0 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ccdc88aQ5SNZ0 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ccdc88aQ5SNZ0 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ccdc88aQ5SNZ0 CT010456.1-201ENSMUST00000222465 1688 ntTSL 5 BASIC18.58■□□□□ 0.57
Ccdc88aQ5SNZ0 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ccdc88aQ5SNZ0 Gm14221-202ENSMUST00000209603 1437 ntTSL 5 BASIC18.58■□□□□ 0.57
Ccdc88aQ5SNZ0 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC18.58■□□□□ 0.57
Ccdc88aQ5SNZ0 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc88aQ5SNZ0 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.56
Ccdc88aQ5SNZ0 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc88aQ5SNZ0 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
Ccdc88aQ5SNZ0 Gm45244-201ENSMUST00000211328 2200 ntBASIC18.58■□□□□ 0.56
Ccdc88aQ5SNZ0 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc88aQ5SNZ0 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc88aQ5SNZ0 Gm4459-201ENSMUST00000118750 468 ntBASIC18.58■□□□□ 0.56
Ccdc88aQ5SNZ0 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC18.58■□□□□ 0.56
Ccdc88aQ5SNZ0 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC18.58■□□□□ 0.56
Ccdc88aQ5SNZ0 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc88aQ5SNZ0 Gm20383-201ENSMUST00000203799 1227 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
Ccdc88aQ5SNZ0 AC158982.1-201ENSMUST00000228377 901 ntBASIC18.58■□□□□ 0.56
Ccdc88aQ5SNZ0 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
Ccdc88aQ5SNZ0 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc88aQ5SNZ0 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc88aQ5SNZ0 AC132265.1-201ENSMUST00000219233 1665 ntBASIC18.57■□□□□ 0.56
Ccdc88aQ5SNZ0 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc88aQ5SNZ0 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc88aQ5SNZ0 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC18.57■□□□□ 0.56
Ccdc88aQ5SNZ0 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC18.57■□□□□ 0.56
Ccdc88aQ5SNZ0 AV026068-213ENSMUST00000223675 1171 ntBASIC18.57■□□□□ 0.56
Ccdc88aQ5SNZ0 Chchd1-203ENSMUST00000224633 557 ntBASIC18.57■□□□□ 0.56
Ccdc88aQ5SNZ0 AC154757.1-201ENSMUST00000228289 336 ntBASIC18.57■□□□□ 0.56
Ccdc88aQ5SNZ0 Gins1-201ENSMUST00000028948 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc88aQ5SNZ0 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc88aQ5SNZ0 Fuz-213ENSMUST00000209039 1453 ntTSL 5 BASIC18.57■□□□□ 0.56
Ccdc88aQ5SNZ0 Haglr-201ENSMUST00000100000 2085 ntBASIC18.57■□□□□ 0.56
Ccdc88aQ5SNZ0 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc88aQ5SNZ0 Sigirr-203ENSMUST00000209294 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
Ccdc88aQ5SNZ0 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ccdc88aQ5SNZ0 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC18.56■□□□□ 0.56
Ccdc88aQ5SNZ0 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ccdc88aQ5SNZ0 Aanat-205ENSMUST00000153476 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ccdc88aQ5SNZ0 Larp1b-205ENSMUST00000191805 1581 ntAPPRIS P2 TSL 5 BASIC18.56■□□□□ 0.56
Ccdc88aQ5SNZ0 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Ccdc88aQ5SNZ0 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC18.56■□□□□ 0.56
Ccdc88aQ5SNZ0 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ccdc88aQ5SNZ0 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ccdc88aQ5SNZ0 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ccdc88aQ5SNZ0 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ccdc88aQ5SNZ0 Crybb1-202ENSMUST00000112375 793 ntAPPRIS P1 TSL 3 BASIC18.56■□□□□ 0.56
Ccdc88aQ5SNZ0 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Ccdc88aQ5SNZ0 AC159114.1-201ENSMUST00000220349 266 ntBASIC18.56■□□□□ 0.56
Retrieved 100 of 76,532 protein–RNA pairs in 24.1 ms