Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ccdc88bQ4QRL3 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ccdc88bQ4QRL3 Gm26904-201ENSMUST00000181301 1742 ntTSL 5 BASIC26.34■■□□□ 1.81
Ccdc88bQ4QRL3 Zfp42-202ENSMUST00000209356 1744 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ccdc88bQ4QRL3 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ccdc88bQ4QRL3 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Ccdc88bQ4QRL3 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC26.33■■□□□ 1.81
Ccdc88bQ4QRL3 Akt2-214ENSMUST00000167435 2865 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ccdc88bQ4QRL3 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC26.33■■□□□ 1.81
Ccdc88bQ4QRL3 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ccdc88bQ4QRL3 Tmsb4x-202ENSMUST00000112175 864 ntTSL 2 BASIC26.33■■□□□ 1.81
Ccdc88bQ4QRL3 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC26.33■■□□□ 1.81
Ccdc88bQ4QRL3 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC26.33■■□□□ 1.81
Ccdc88bQ4QRL3 Egfl7-216ENSMUST00000174211 1163 ntAPPRIS P4 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ccdc88bQ4QRL3 AC093926.2-201ENSMUST00000214468 1228 ntBASIC26.33■■□□□ 1.81
Ccdc88bQ4QRL3 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ccdc88bQ4QRL3 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ccdc88bQ4QRL3 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
Ccdc88bQ4QRL3 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
Ccdc88bQ4QRL3 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.8
Ccdc88bQ4QRL3 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ccdc88bQ4QRL3 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ccdc88bQ4QRL3 Gm20646-202ENSMUST00000199521 660 ntTSL 3 BASIC26.32■■□□□ 1.8
Ccdc88bQ4QRL3 Cyba-202ENSMUST00000212600 638 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
Ccdc88bQ4QRL3 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC26.32■■□□□ 1.8
Ccdc88bQ4QRL3 AC147366.1-201ENSMUST00000227671 852 ntBASIC26.32■■□□□ 1.8
Ccdc88bQ4QRL3 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ccdc88bQ4QRL3 Erlin1-201ENSMUST00000071698 3228 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
Ccdc88bQ4QRL3 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ccdc88bQ4QRL3 Rgs3-203ENSMUST00000098031 2072 ntAPPRIS ALT1 TSL 5 BASIC26.32■■□□□ 1.8
Ccdc88bQ4QRL3 Ptpn2-201ENSMUST00000025420 1568 ntAPPRIS P3 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ccdc88bQ4QRL3 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Ccdc88bQ4QRL3 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Ccdc88bQ4QRL3 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC26.31■■□□□ 1.8
Ccdc88bQ4QRL3 Chchd7-203ENSMUST00000119307 889 ntAPPRIS P1 TSL 2 BASIC26.31■■□□□ 1.8
Ccdc88bQ4QRL3 E530001F21Rik-201ENSMUST00000120991 730 ntBASIC26.31■■□□□ 1.8
Ccdc88bQ4QRL3 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC26.31■■□□□ 1.8
Ccdc88bQ4QRL3 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Ccdc88bQ4QRL3 Wnt10b-206ENSMUST00000228546 2709 ntBASIC26.31■■□□□ 1.8
Ccdc88bQ4QRL3 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
Ccdc88bQ4QRL3 Hmga1b-201ENSMUST00000105046 1626 ntAPPRIS P1 BASIC26.31■■□□□ 1.8
Ccdc88bQ4QRL3 Gm26596-201ENSMUST00000180464 2655 ntBASIC26.31■■□□□ 1.8
Ccdc88bQ4QRL3 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
Ccdc88bQ4QRL3 Gm26669-201ENSMUST00000181323 1808 ntTSL 5 BASIC26.31■■□□□ 1.8
Ccdc88bQ4QRL3 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Ccdc88bQ4QRL3 Aig1-202ENSMUST00000105534 617 ntTSL 5 BASIC26.3■■□□□ 1.8
Ccdc88bQ4QRL3 Gm42900-201ENSMUST00000197184 2167 ntBASIC26.3■■□□□ 1.8
Ccdc88bQ4QRL3 Arl3-201ENSMUST00000026009 822 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Ccdc88bQ4QRL3 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Ccdc88bQ4QRL3 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Ccdc88bQ4QRL3 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC26.3■■□□□ 1.8
Ccdc88bQ4QRL3 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
Ccdc88bQ4QRL3 Tmem97-201ENSMUST00000103242 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Ccdc88bQ4QRL3 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
Ccdc88bQ4QRL3 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Ccdc88bQ4QRL3 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Ccdc88bQ4QRL3 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Ccdc88bQ4QRL3 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
Ccdc88bQ4QRL3 Pole4-201ENSMUST00000095786 1769 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
Ccdc88bQ4QRL3 Ndufb6-201ENSMUST00000095128 659 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Ccdc88bQ4QRL3 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC26.29■■□□□ 1.8
Ccdc88bQ4QRL3 Mfge8-201ENSMUST00000032825 2125 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ccdc88bQ4QRL3 Gstz1-205ENSMUST00000222885 1571 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Ccdc88bQ4QRL3 Cd40-202ENSMUST00000073707 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ccdc88bQ4QRL3 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
Ccdc88bQ4QRL3 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ccdc88bQ4QRL3 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ccdc88bQ4QRL3 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ccdc88bQ4QRL3 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ccdc88bQ4QRL3 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Ccdc88bQ4QRL3 Dmrtb1-201ENSMUST00000069271 1861 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
Ccdc88bQ4QRL3 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ccdc88bQ4QRL3 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ccdc88bQ4QRL3 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ccdc88bQ4QRL3 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Ccdc88bQ4QRL3 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
Ccdc88bQ4QRL3 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
Ccdc88bQ4QRL3 Prr14-201ENSMUST00000033095 2402 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ccdc88bQ4QRL3 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
Ccdc88bQ4QRL3 Nrip2-202ENSMUST00000120405 1468 ntTSL 2 BASIC26.27■■□□□ 1.8
Ccdc88bQ4QRL3 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
Ccdc88bQ4QRL3 Fiz1-208ENSMUST00000208944 2306 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ccdc88bQ4QRL3 Slc25a5-201ENSMUST00000016463 1240 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ccdc88bQ4QRL3 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
Ccdc88bQ4QRL3 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ccdc88bQ4QRL3 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Ccdc88bQ4QRL3 1190007I07Rik-201ENSMUST00000079648 716 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ccdc88bQ4QRL3 Olfr615-201ENSMUST00000098198 942 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
Ccdc88bQ4QRL3 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ccdc88bQ4QRL3 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ccdc88bQ4QRL3 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
Ccdc88bQ4QRL3 Adprhl1-201ENSMUST00000033825 1372 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Ccdc88bQ4QRL3 Mis18bp1-208ENSMUST00000222244 2053 ntTSL 1 (best) BASIC26.26■■□□□ 1.8
Ccdc88bQ4QRL3 AC122301.2-201ENSMUST00000219020 1474 ntTSL 5 BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Cbarp-201ENSMUST00000105369 3121 ntAPPRIS P2 TSL 5 BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 D16Ertd472e-203ENSMUST00000114220 2453 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Brd3os-202ENSMUST00000209765 1898 ntAPPRIS P1 BASIC26.26■■□□□ 1.79
Ccdc88bQ4QRL3 Gm13597-201ENSMUST00000121239 375 ntBASIC26.26■■□□□ 1.79
Retrieved 100 of 76,532 protein–RNA pairs in 22.4 ms