Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Haghl-206ENSMUST00000138759 1074 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 AC093926.2-201ENSMUST00000214468 1228 ntBASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Gm9898-201ENSMUST00000065469 1161 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Gm45844-204ENSMUST00000209833 1524 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
Ddb1Q3U1J4 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Relb-201ENSMUST00000049912 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Gm8344-201ENSMUST00000119813 856 ntBASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Gm15655-201ENSMUST00000134649 440 ntTSL 2 BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Runx2os2-201ENSMUST00000161664 818 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 5033428I22Rik-203ENSMUST00000210614 952 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Gm7787-201ENSMUST00000216858 688 ntBASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Caskin1-201ENSMUST00000024958 6172 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Zdhhc25-201ENSMUST00000066949 1368 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
Ddb1Q3U1J4 Mst1-204ENSMUST00000162886 2209 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Ddb1Q3U1J4 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ddb1Q3U1J4 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ddb1Q3U1J4 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC20.55■□□□□ 0.88
Ddb1Q3U1J4 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ddb1Q3U1J4 Acvr1c-203ENSMUST00000112607 1266 ntTSL 5 BASIC20.55■□□□□ 0.88
Ddb1Q3U1J4 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Ddb1Q3U1J4 Gm44335-201ENSMUST00000196879 141 ntBASIC20.55■□□□□ 0.88
Ddb1Q3U1J4 Gm44297-201ENSMUST00000198304 141 ntBASIC20.55■□□□□ 0.88
Ddb1Q3U1J4 Gm44346-201ENSMUST00000198851 141 ntBASIC20.55■□□□□ 0.88
Ddb1Q3U1J4 Stradb-201ENSMUST00000027185 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ddb1Q3U1J4 Alkbh7-201ENSMUST00000002737 917 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ddb1Q3U1J4 Pcna-ps2-201ENSMUST00000088040 1257 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Ddb1Q3U1J4 Srcin1-201ENSMUST00000107590 5493 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Ddb1Q3U1J4 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Ddb1Q3U1J4 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
Ddb1Q3U1J4 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
Ddb1Q3U1J4 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddb1Q3U1J4 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Ddb1Q3U1J4 Mzt1-201ENSMUST00000042662 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddb1Q3U1J4 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddb1Q3U1J4 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddb1Q3U1J4 Gm13365-201ENSMUST00000121188 973 ntBASIC20.54■□□□□ 0.88
Ddb1Q3U1J4 Gemin7-204ENSMUST00000122055 609 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
Ddb1Q3U1J4 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Ddb1Q3U1J4 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddb1Q3U1J4 Mir7036b-201ENSMUST00000184791 63 ntBASIC20.54■□□□□ 0.88
Ddb1Q3U1J4 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddb1Q3U1J4 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddb1Q3U1J4 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddb1Q3U1J4 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddb1Q3U1J4 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Ddb1Q3U1J4 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Ddb1Q3U1J4 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Ddb1Q3U1J4 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 Rps2-ps5-201ENSMUST00000184266 849 ntBASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 Best4-ps-201ENSMUST00000129783 1380 ntBASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 Zbtb25-204ENSMUST00000176278 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 5031425F14Rik-201ENSMUST00000127920 2098 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 Baz1a-201ENSMUST00000038926 6188 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 Pacs2-207ENSMUST00000223502 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 Slc35c2-203ENSMUST00000109299 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 Gm11620-201ENSMUST00000118770 1845 ntBASIC20.53■□□□□ 0.88
Ddb1Q3U1J4 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Ddb1Q3U1J4 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ddb1Q3U1J4 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Ddb1Q3U1J4 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
Ddb1Q3U1J4 Zfpm1-201ENSMUST00000054052 3390 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Ddb1Q3U1J4 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC20.52■□□□□ 0.88
Ddb1Q3U1J4 Gm13332-201ENSMUST00000120451 1398 ntBASIC20.52■□□□□ 0.88
Ddb1Q3U1J4 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Ddb1Q3U1J4 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms