Protein–RNA interactions for Protein: P70390

Shox2, Short stature homeobox protein 2, mousemouse

Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shox2P70390 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC16.13■□□□□ 0.17
Shox2P70390 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Shox2P70390 Coro1a-209ENSMUST00000173108 1170 ntTSL 5 BASIC16.13■□□□□ 0.17
Shox2P70390 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Shox2P70390 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Shox2P70390 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Shox2P70390 Gda-201ENSMUST00000087600 5428 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Shox2P70390 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Shox2P70390 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Shox2P70390 Ttc14-202ENSMUST00000108210 2684 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
Shox2P70390 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Shox2P70390 Gm45351-201ENSMUST00000210683 2545 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Shox2P70390 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC16.13■□□□□ 0.17
Shox2P70390 Medag-201ENSMUST00000093110 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Shox2P70390 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC16.13■□□□□ 0.17
Shox2P70390 Fam69c-201ENSMUST00000052501 2153 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Shox2P70390 Lrp8os3-201ENSMUST00000125464 1770 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Shox2P70390 Lipo3-202ENSMUST00000112508 2839 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Shox2P70390 Anapc16-201ENSMUST00000020307 1379 ntTSL 2 BASIC16.13■□□□□ 0.17
Shox2P70390 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC16.12■□□□□ 0.17
Shox2P70390 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Shox2P70390 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Shox2P70390 Sox17-201ENSMUST00000027035 3127 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Shox2P70390 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Shox2P70390 Klhl26-202ENSMUST00000166976 2734 ntTSL 2 BASIC16.12■□□□□ 0.17
Shox2P70390 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Shox2P70390 Gm10676-201ENSMUST00000098778 3221 ntBASIC16.12■□□□□ 0.17
Shox2P70390 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Shox2P70390 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Shox2P70390 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC16.12■□□□□ 0.17
Shox2P70390 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC16.12■□□□□ 0.17
Shox2P70390 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Shox2P70390 AC099934.2-201ENSMUST00000196389 70 ntBASIC16.12■□□□□ 0.17
Shox2P70390 AC156953.1-201ENSMUST00000196953 70 ntBASIC16.12■□□□□ 0.17
Shox2P70390 AC157822.2-201ENSMUST00000200291 70 ntBASIC16.12■□□□□ 0.17
Shox2P70390 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Shox2P70390 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Shox2P70390 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Shox2P70390 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Shox2P70390 Gm10493-201ENSMUST00000097270 612 ntBASIC16.12■□□□□ 0.17
Shox2P70390 Cpz-201ENSMUST00000038676 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Shox2P70390 Nyap1-204ENSMUST00000212152 2499 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Shox2P70390 Klhl12-202ENSMUST00000112232 3220 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Shox2P70390 Col11a2-202ENSMUST00000114252 5620 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Shox2P70390 Arhgap11a-204ENSMUST00000110949 4458 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
Shox2P70390 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Shox2P70390 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Shox2P70390 Ncoa1-201ENSMUST00000085814 7329 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Shox2P70390 Gm45546-201ENSMUST00000211053 2394 ntBASIC16.12■□□□□ 0.17
Shox2P70390 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Shox2P70390 Gm996-203ENSMUST00000188161 2925 ntAPPRIS P1 BASIC16.12■□□□□ 0.17
Shox2P70390 3110002H16Rik-201ENSMUST00000025276 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Ppfia3-207ENSMUST00000211067 4565 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Shox2P70390 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Zfp281-201ENSMUST00000047734 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 St6galnac2-201ENSMUST00000079545 3643 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Cstf2-203ENSMUST00000113287 3661 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Gm38327-201ENSMUST00000195852 1755 ntBASIC16.11■□□□□ 0.17
Shox2P70390 Usp35-202ENSMUST00000168435 3982 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Shox2P70390 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Msl1-201ENSMUST00000037915 4593 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Sema3b-204ENSMUST00000102531 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Alkbh1-212ENSMUST00000185301 408 ntBASIC16.11■□□□□ 0.17
Shox2P70390 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC16.11■□□□□ 0.17
Shox2P70390 Eif5a-210ENSMUST00000108613 1343 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Patz1-201ENSMUST00000057089 3118 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 G2e3-202ENSMUST00000119211 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Shox2P70390 Pnma1-201ENSMUST00000061425 2359 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Shox2P70390 9530059O14Rik-202ENSMUST00000181682 2093 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Shox2P70390 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Shox2P70390 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Shox2P70390 Tm9sf2-203ENSMUST00000171318 1494 ntTSL 5 BASIC16.1■□□□□ 0.17
Shox2P70390 Gfra2-202ENSMUST00000227633 1480 ntBASIC16.1■□□□□ 0.17
Shox2P70390 Dnajb2-208ENSMUST00000188346 1823 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Shox2P70390 Dnajc28-201ENSMUST00000049244 1891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Shox2P70390 Spdya-201ENSMUST00000064420 1877 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Shox2P70390 Zfp410-201ENSMUST00000045931 2597 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Shox2P70390 Klhl26-204ENSMUST00000209567 2615 ntTSL 3 BASIC16.1■□□□□ 0.17
Shox2P70390 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC16.1■□□□□ 0.17
Shox2P70390 Dag1-203ENSMUST00000171412 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Shox2P70390 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Shox2P70390 Gm15889-201ENSMUST00000159142 1083 ntTSL 3 BASIC16.1■□□□□ 0.17
Shox2P70390 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC16.1■□□□□ 0.17
Shox2P70390 Rab3c-203ENSMUST00000224180 967 ntBASIC16.1■□□□□ 0.17
Shox2P70390 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Shox2P70390 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Shox2P70390 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Shox2P70390 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Shox2P70390 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Shox2P70390 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 37.2 ms