Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx1P48377 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx1P48377 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC19.46■□□□□ 0.71
Rfx1P48377 Adipor1-201ENSMUST00000027727 3123 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx1P48377 Shank3-202ENSMUST00000066545 4702 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx1P48377 Phf21b-203ENSMUST00000159939 3639 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx1P48377 AC135637.1-201ENSMUST00000227750 365 ntBASIC19.46■□□□□ 0.71
Rfx1P48377 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Rfx1P48377 Fam184a-201ENSMUST00000020003 4164 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
Rfx1P48377 Kif21a-204ENSMUST00000109287 6124 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx1P48377 Kif21a-205ENSMUST00000109288 6142 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx1P48377 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx1P48377 4930524O07Rik-203ENSMUST00000193135 2289 ntBASIC19.46■□□□□ 0.71
Rfx1P48377 Ppp1r12b-202ENSMUST00000086444 3137 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
Rfx1P48377 Fam222b-202ENSMUST00000100782 2473 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx1P48377 Gm45470-202ENSMUST00000210817 2192 ntTSL 5 BASIC19.46■□□□□ 0.71
Rfx1P48377 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx1P48377 Trmo-201ENSMUST00000030015 1527 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Rfx1P48377 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Rfx1P48377 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx1P48377 Eif4g1-202ENSMUST00000073840 5394 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Rfx1P48377 Dlgap1-201ENSMUST00000060072 5420 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx1P48377 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx1P48377 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx1P48377 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx1P48377 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC19.45■□□□□ 0.7
Rfx1P48377 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx1P48377 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx1P48377 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx1P48377 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx1P48377 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx1P48377 Ero1lb-203ENSMUST00000221560 1964 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx1P48377 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC19.45■□□□□ 0.7
Rfx1P48377 Cdc42se2-201ENSMUST00000064104 3069 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx1P48377 Pdzd4-202ENSMUST00000114438 3625 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx1P48377 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx1P48377 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
Rfx1P48377 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC19.45■□□□□ 0.7
Rfx1P48377 Slc35b2-207ENSMUST00000226086 850 ntBASIC19.45■□□□□ 0.7
Rfx1P48377 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx1P48377 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx1P48377 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Rfx1P48377 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx1P48377 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx1P48377 Large2-201ENSMUST00000068586 2445 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx1P48377 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx1P48377 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx1P48377 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx1P48377 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx1P48377 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
Rfx1P48377 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx1P48377 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx1P48377 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC19.44■□□□□ 0.7
Rfx1P48377 B230219D22Rik-201ENSMUST00000057844 4652 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx1P48377 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Rfx1P48377 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
Rfx1P48377 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx1P48377 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx1P48377 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Rfx1P48377 Rnf138-202ENSMUST00000072847 3002 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 9130019P16Rik-202ENSMUST00000145111 4486 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Rfx1P48377 Camsap3-201ENSMUST00000057028 4450 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 Asb2-204ENSMUST00000149431 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC19.43■□□□□ 0.7
Rfx1P48377 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 Cldn22-201ENSMUST00000038693 995 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Rfx1P48377 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 5830415G21Rik-201ENSMUST00000192543 1332 ntBASIC19.43■□□□□ 0.7
Rfx1P48377 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
Rfx1P48377 Rims3-201ENSMUST00000071093 6505 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 Plcl1-201ENSMUST00000042986 6580 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 Sncb-201ENSMUST00000036825 1351 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Rfx1P48377 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC19.42■□□□□ 0.7
Rfx1P48377 AC154855.1-201ENSMUST00000227353 1458 ntBASIC19.42■□□□□ 0.7
Rfx1P48377 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rfx1P48377 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rfx1P48377 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rfx1P48377 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC19.42■□□□□ 0.7
Rfx1P48377 Pdzd4-201ENSMUST00000002080 3970 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rfx1P48377 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rfx1P48377 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
Rfx1P48377 Antxr1-205ENSMUST00000205033 3160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rfx1P48377 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC19.42■□□□□ 0.7
Rfx1P48377 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rfx1P48377 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rfx1P48377 Trim39-203ENSMUST00000113706 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rfx1P48377 Usp30-201ENSMUST00000031588 4604 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rfx1P48377 Rcbtb1-201ENSMUST00000022551 3957 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Rfx1P48377 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 57.9 ms