Protein–RNA interactions for Protein: D3Z4R1

Hfm1, Probable ATP-dependent DNA helicase HFM1, mousemouse

Predictions only

Length 1,434 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hfm1D3Z4R1 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.23
Hfm1D3Z4R1 Mycbpap-201ENSMUST00000040692 1512 ntTSL 1 (best) BASIC22.7■■□□□ 1.23
Hfm1D3Z4R1 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC22.7■■□□□ 1.23
Hfm1D3Z4R1 Glra1-201ENSMUST00000075603 2037 ntAPPRIS ALT1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Hfm1D3Z4R1 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
Hfm1D3Z4R1 Fam126b-201ENSMUST00000038372 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Hfm1D3Z4R1 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Hfm1D3Z4R1 Gm11745-201ENSMUST00000121669 448 ntBASIC22.7■■□□□ 1.22
Hfm1D3Z4R1 Arhgap27os1-201ENSMUST00000130556 923 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
Hfm1D3Z4R1 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Hfm1D3Z4R1 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Hfm1D3Z4R1 Gapdh-201ENSMUST00000073605 1272 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Hfm1D3Z4R1 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Hfm1D3Z4R1 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Hfm1D3Z4R1 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Hfm1D3Z4R1 Psmd14-201ENSMUST00000028278 1541 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
Hfm1D3Z4R1 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC22.69■■□□□ 1.22
Hfm1D3Z4R1 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Hfm1D3Z4R1 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC22.69■■□□□ 1.22
Hfm1D3Z4R1 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC22.69■■□□□ 1.22
Hfm1D3Z4R1 Cby3-202ENSMUST00000164067 731 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
Hfm1D3Z4R1 Cebpzos-202ENSMUST00000180077 602 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Hfm1D3Z4R1 Hnrnpa1l2-ps2-201ENSMUST00000022493 963 ntBASIC22.69■■□□□ 1.22
Hfm1D3Z4R1 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Hfm1D3Z4R1 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC22.69■■□□□ 1.22
Hfm1D3Z4R1 Nkiras2-201ENSMUST00000017981 2097 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Hfm1D3Z4R1 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Hfm1D3Z4R1 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Hfm1D3Z4R1 Anapc5-218ENSMUST00000200645 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
Hfm1D3Z4R1 Cnksr1-201ENSMUST00000030645 2468 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
Hfm1D3Z4R1 Cntln-204ENSMUST00000169371 5365 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
Hfm1D3Z4R1 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC22.69■■□□□ 1.22
Hfm1D3Z4R1 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
Hfm1D3Z4R1 Card10-203ENSMUST00000170584 3220 ntAPPRIS ALT2 TSL 5 BASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Matn4-201ENSMUST00000103103 2304 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Gm20949-201ENSMUST00000206478 952 ntBASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Tpd52l1-202ENSMUST00000213528 969 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 9430081H08Rik-201ENSMUST00000217460 818 ntBASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Nrn1-204ENSMUST00000224323 1779 ntBASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Zdhhc24-201ENSMUST00000006632 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Fgf9-201ENSMUST00000022545 1593 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Wdr45-201ENSMUST00000043045 1609 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
Hfm1D3Z4R1 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC22.67■■□□□ 1.22
Hfm1D3Z4R1 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC22.67■■□□□ 1.22
Hfm1D3Z4R1 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
Hfm1D3Z4R1 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC22.67■■□□□ 1.22
Hfm1D3Z4R1 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Hfm1D3Z4R1 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Hfm1D3Z4R1 Hsf5-201ENSMUST00000093956 4158 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
Hfm1D3Z4R1 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
Hfm1D3Z4R1 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC22.67■■□□□ 1.22
Hfm1D3Z4R1 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC22.67■■□□□ 1.22
Hfm1D3Z4R1 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
Hfm1D3Z4R1 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 Rpl26-206ENSMUST00000167436 606 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 Mir7036b-201ENSMUST00000184791 63 ntBASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 Mir7023-201ENSMUST00000185093 64 ntBASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 C1qtnf2-201ENSMUST00000057679 1211 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 AC119177.1-201ENSMUST00000227647 1332 ntBASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 Fam46b-201ENSMUST00000051676 2287 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 Mettl27-203ENSMUST00000111218 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 Ythdf1-201ENSMUST00000037299 3184 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
Hfm1D3Z4R1 Nespas-202ENSMUST00000150276 1262 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Hfm1D3Z4R1 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Hfm1D3Z4R1 Cdipt-205ENSMUST00000206450 951 ntTSL 5 BASIC22.65■■□□□ 1.22
Hfm1D3Z4R1 AC151836.1-202ENSMUST00000226259 753 ntBASIC22.65■■□□□ 1.22
Hfm1D3Z4R1 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC22.65■■□□□ 1.22
Hfm1D3Z4R1 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC22.65■■□□□ 1.22
Hfm1D3Z4R1 Gm27198-201ENSMUST00000184172 1517 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Hfm1D3Z4R1 1700010B13Rik-202ENSMUST00000189435 1549 ntTSL 3 BASIC22.65■■□□□ 1.22
Hfm1D3Z4R1 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Hfm1D3Z4R1 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
Hfm1D3Z4R1 Dph5-204ENSMUST00000189799 1558 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
Hfm1D3Z4R1 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC22.65■■□□□ 1.22
Hfm1D3Z4R1 Gm27301-201ENSMUST00000184012 127 ntBASIC22.65■■□□□ 1.22
Hfm1D3Z4R1 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
Hfm1D3Z4R1 Tmem38a-203ENSMUST00000212763 882 ntTSL 3 BASIC22.65■■□□□ 1.22
Hfm1D3Z4R1 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC22.65■■□□□ 1.22
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms