Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SF3A1Q15459 AP005264.7-201ENST00000625003 745 ntBASIC4.76□□□□□ -1.65
SF3A1Q15459 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.76□□□□□ -1.65
SF3A1Q15459 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.76□□□□□ -1.65
SF3A1Q15459 PLAG1-201ENST00000316981 7322 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SF3A1Q15459 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SF3A1Q15459 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SF3A1Q15459 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
SF3A1Q15459 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SF3A1Q15459 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC4.75□□□□□ -1.65
SF3A1Q15459 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
SF3A1Q15459 RNA5SP118-201ENST00000410385 109 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 RNA5SP306-201ENST00000411087 107 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 RNU6-373P-201ENST00000411247 98 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 AC009237.5-201ENST00000414271 501 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 AC063979.1-201ENST00000415539 377 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC4.75□□□□□ -1.65
SF3A1Q15459 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.75□□□□□ -1.65
SF3A1Q15459 AC012498.1-201ENST00000424037 437 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 AC008067.1-203ENST00000430876 359 ntTSL 3 BASIC4.75□□□□□ -1.65
SF3A1Q15459 AL591704.1-201ENST00000432574 275 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 HMGB3P11-201ENST00000440127 604 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 AL353572.1-201ENST00000442490 417 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 RPS24P13-201ENST00000442520 397 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 MTND4P18-201ENST00000447010 465 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.75□□□□□ -1.65
SF3A1Q15459 HMGN2P7-201ENST00000456186 273 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 AC084357.1-201ENST00000473404 255 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 RPS29P25-201ENST00000481709 171 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 SUMO2P6-201ENST00000505273 288 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC4.75□□□□□ -1.65
SF3A1Q15459 GYPA-208ENST00000512064 441 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SF3A1Q15459 RN7SKP122-201ENST00000515923 296 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 RNU6-1315P-201ENST00000517187 99 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 IGKV2-38-201ENST00000517443 247 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.75□□□□□ -1.65
SF3A1Q15459 AP000790.2-201ENST00000534388 522 ntTSL 3 BASIC4.75□□□□□ -1.65
SF3A1Q15459 BNIP3P6-201ENST00000549284 499 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC4.75□□□□□ -1.65
SF3A1Q15459 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC4.75□□□□□ -1.65
SF3A1Q15459 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC4.75□□□□□ -1.65
SF3A1Q15459 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC4.75□□□□□ -1.65
SF3A1Q15459 AL161729.3-201ENST00000603533 673 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 AL356218.2-201ENST00000605264 187 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 AC012531.5-201ENST00000611375 151 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 AC099654.14-201ENST00000638599 341 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 OTUD4P1-201ENST00000237841 3067 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 MAPK10-253ENST00000641010 4072 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 MAPK10-372ENST00000641954 3413 ntBASIC4.75□□□□□ -1.65
SF3A1Q15459 YWHAZ-211ENST00000457309 3007 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
SF3A1Q15459 LINC02471-203ENST00000641941 4752 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SF3A1Q15459 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC4.74□□□□□ -1.65
SF3A1Q15459 HSPA8P4-201ENST00000511877 1920 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.74□□□□□ -1.65
SF3A1Q15459 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC4.74□□□□□ -1.65
SF3A1Q15459 OR5I1-201ENST00000301532 945 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
SF3A1Q15459 Y_RNA.231-201ENST00000364358 102 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 RNA5SP509-201ENST00000364577 119 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 RNU4-20P-201ENST00000365601 151 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 RNU6-140P-201ENST00000384566 108 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 SNORA3C-201ENST00000408792 125 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 RPL30P16-201ENST00000419341 429 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 AC079799.1-201ENST00000430696 331 ntTSL 3 BASIC4.74□□□□□ -1.65
SF3A1Q15459 RPL23AP69-201ENST00000431134 458 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 FABP5P15-201ENST00000453566 214 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 CEACAMP4-201ENST00000457676 421 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 SCARNA18-201ENST00000459004 134 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 AC108475.1-201ENST00000507880 950 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 AC093840.1-201ENST00000511599 336 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 RNA5SP165-201ENST00000517142 115 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 AC134698.4-201ENST00000523451 826 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC4.74□□□□□ -1.65
SF3A1Q15459 AL138976.2-201ENST00000563989 694 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 AC022655.2-201ENST00000577280 318 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 MIR548S-201ENST00000581352 82 ntBASIC4.74□□□□□ -1.65
SF3A1Q15459 SEPT14P19-202ENST00000632397 370 ntTSL 3 BASIC4.74□□□□□ -1.65
SF3A1Q15459 IPO11-202ENST00000409296 3564 ntTSL 2 BASIC4.74□□□□□ -1.65
SF3A1Q15459 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.74□□□□□ -1.65
SF3A1Q15459 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.74□□□□□ -1.65
SF3A1Q15459 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SF3A1Q15459 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC4.73□□□□□ -1.65
SF3A1Q15459 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
SF3A1Q15459 PPIP5K2-201ENST00000321521 15407 ntAPPRIS P3 TSL 5 BASIC4.73□□□□□ -1.65
SF3A1Q15459 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC4.73□□□□□ -1.65
SF3A1Q15459 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
SF3A1Q15459 EDDM3A-201ENST00000326842 927 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SF3A1Q15459 SNORA4.3-201ENST00000365564 137 ntBASIC4.73□□□□□ -1.65
SF3A1Q15459 AL592114.1-201ENST00000403842 483 ntBASIC4.73□□□□□ -1.65
SF3A1Q15459 BX323014.1-201ENST00000412876 237 ntBASIC4.73□□□□□ -1.65
SF3A1Q15459 AC011933.1-201ENST00000413334 321 ntBASIC4.73□□□□□ -1.65
SF3A1Q15459 AL121601.2-201ENST00000438019 707 ntBASIC4.73□□□□□ -1.65
SF3A1Q15459 MTCO2P3-201ENST00000442543 421 ntBASIC4.73□□□□□ -1.65
SF3A1Q15459 AC004801.2-202ENST00000463559 283 ntBASIC4.73□□□□□ -1.65
SF3A1Q15459 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.73□□□□□ -1.65
SF3A1Q15459 RPL23AP11-201ENST00000475260 469 ntBASIC4.73□□□□□ -1.65
SF3A1Q15459 RPL30P14-201ENST00000482744 348 ntBASIC4.73□□□□□ -1.65
SF3A1Q15459 FCF1P3-201ENST00000496394 590 ntBASIC4.73□□□□□ -1.65
SF3A1Q15459 AC139783.2-201ENST00000504847 1145 ntBASIC4.73□□□□□ -1.65
SF3A1Q15459 AC006445.2-201ENST00000510061 472 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms