Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 NRON-201ENST00000517270 370 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 AC026403.1-201ENST00000518938 295 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 IL18-204ENST00000528832 795 ntAPPRIS P3 TSL 3 BASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 AP002453.2-201ENST00000533503 320 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 AC007458.1-201ENST00000542812 373 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 AC007115.1-201ENST00000546853 234 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 HIGD1AP1-201ENST00000550979 275 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 AC124947.2-202ENST00000552735 133 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 AC005771.1-201ENST00000585581 349 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 NBR2-204ENST00000587322 63 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 AC093227.2-201ENST00000589357 285 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 AC013553.2-201ENST00000604244 589 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 AC073657.2-201ENST00000605661 303 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 AC008962.1-201ENST00000605729 304 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 STARD13-AS-239ENST00000609588 982 ntTSL 5 BASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 AC131902.3-201ENST00000611767 581 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 AC084782.3-201ENST00000612282 578 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 AC002076.2-201ENST00000617362 122 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 AC012442.3-202ENST00000636742 206 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 AL136164.4-201ENST00000625013 2135 ntBASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
LIMA1Q9UHB6 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 Z83843.1-201ENST00000604070 3685 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 CUL1P1-201ENST00000509510 2425 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 OR1S2-201ENST00000302592 978 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 RFPL3S-202ENST00000382086 455 ntAPPRIS ALT2 TSL 2 BASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 MRPL42P2-201ENST00000403169 426 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 AC006366.1-201ENST00000422002 759 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 AL513365.2-201ENST00000423060 529 ntTSL 2 BASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 TRIM60P10Y-201ENST00000425589 751 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 TAAR7P-201ENST00000436141 242 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 TRIM60P8Y-201ENST00000436338 762 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 KATNBL1P3-201ENST00000443475 909 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 AL360221.1-201ENST00000445989 335 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 AC016696.1-201ENST00000446949 318 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 GAPDHP27-201ENST00000447427 1020 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 AL133547.1-201ENST00000448546 220 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 AL033528.1-201ENST00000453780 140 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 snoU109.1-201ENST00000459339 135 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 SNORD42A-201ENST00000459584 64 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 AC010424.1-201ENST00000506336 297 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 RNA5SP380-201ENST00000517190 98 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 RNU1-45P-201ENST00000517191 141 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 AC093012.1-202ENST00000549403 582 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 AL845331.3-202ENST00000562856 261 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 SEPT7P9-203ENST00000604116 343 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 AP000860.1-201ENST00000605250 559 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 uc_338.25-201ENST00000613756 156 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 AC006338.1-201ENST00000618453 749 ntBASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 TTN-AS1-263ENST00000627527 784 ntTSL 5 BASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
LIMA1Q9UHB6 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 AL390237.1-201ENST00000404226 1415 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 GNG5P1-201ENST00000255500 204 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 HMGB1-201ENST00000326004 821 ntTSL 3 BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 Y_RNA.126-201ENST00000363382 111 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 RNU6-1284P-201ENST00000363701 100 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 Y_RNA.318-201ENST00000365131 97 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 RNU6-297P-201ENST00000384636 107 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 Y_RNA.553-201ENST00000384670 102 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 FAT1P1-201ENST00000406588 507 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 OFD1P1Y-201ENST00000411756 1225 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 AL451054.2-201ENST00000420896 202 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 TMEM167AP1-201ENST00000423409 219 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 AL589872.1-201ENST00000426602 288 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 AC018644.1-201ENST00000429934 551 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 RPL21P133-201ENST00000443666 476 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 USP9YP29-201ENST00000445112 563 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 AC009237.8-201ENST00000445492 379 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 UQCRHP3-201ENST00000451503 251 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 ZBTB20-AS2-201ENST00000478301 372 ntTSL 2 BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 RPL30P5-201ENST00000494923 336 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 TTC39CP1-201ENST00000512513 755 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 LINCR-0001-203ENST00000524047 545 ntTSL 4 BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 AP000873.5-201ENST00000533906 236 ntBASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 LINC02311-202ENST00000556819 477 ntTSL 3 BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 AC015908.4-201ENST00000582334 575 ntTSL 4 BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.48□□□□□ -1.85
LIMA1Q9UHB6 RSL24D1P11-201ENST00000591045 491 ntBASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 81.8 ms