Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 MTATP6P31-201ENST00000406985 692 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 OR51A5P-201ENST00000415429 942 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC0.82□□□□□ -2.28
LINC00643Q86TS7 RPL27AP8-201ENST00000424277 446 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC0.82□□□□□ -2.28
LINC00643Q86TS7 HMGB1P9-201ENST00000429856 646 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 AC000041.1-201ENST00000439655 175 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 MTCYBP12-201ENST00000440559 1134 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC0.82□□□□□ -2.28
LINC00643Q86TS7 CHODL-AS1-201ENST00000447175 1117 ntTSL 2 BASIC0.82□□□□□ -2.28
LINC00643Q86TS7 AC079448.1-201ENST00000449377 373 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 AMD1P1-201ENST00000457220 922 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 SNORD97-201ENST00000459187 142 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 AC139453.3-201ENST00000493276 369 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 RPL30P5-201ENST00000494923 336 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 SUMO2P6-201ENST00000505273 288 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 LTV1P1-201ENST00000510683 1237 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC0.82□□□□□ -2.28
LINC00643Q86TS7 AC022118.1-201ENST00000512352 547 ntTSL 5 BASIC0.82□□□□□ -2.28
LINC00643Q86TS7 PTK2-220ENST00000520151 573 ntTSL 4 BASIC0.82□□□□□ -2.28
LINC00643Q86TS7 AC136188.1-201ENST00000546770 342 ntTSL 3 BASIC0.82□□□□□ -2.28
LINC00643Q86TS7 JKAMP-212ENST00000556985 592 ntTSL 2 BASIC0.82□□□□□ -2.28
LINC00643Q86TS7 AL021997.1-201ENST00000605757 193 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 AC021755.4-201ENST00000616620 456 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 MIR6719-201ENST00000622428 87 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 AC068057.2-201ENST00000624047 895 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 AC091925.2-201ENST00000625059 256 ntBASIC0.82□□□□□ -2.28
LINC00643Q86TS7 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC0.82□□□□□ -2.28
LINC00643Q86TS7 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC0.82□□□□□ -2.28
LINC00643Q86TS7 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC0.82□□□□□ -2.28
LINC00643Q86TS7 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC0.82□□□□□ -2.28
LINC00643Q86TS7 AC006026.1-201ENST00000444025 1803 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC0.81□□□□□ -2.28
LINC00643Q86TS7 CBX3P1-201ENST00000325243 554 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 U8.1-201ENST00000362843 134 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC0.81□□□□□ -2.28
LINC00643Q86TS7 RNU6-203P-201ENST00000384038 104 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 SNORA67.3-201ENST00000384366 140 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
LINC00643Q86TS7 RPS3AP9-201ENST00000417027 792 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 AJ239321.1-201ENST00000424255 564 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 UBE2D3P1-201ENST00000436669 444 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 MAP3K13-207ENST00000438798 388 ntTSL 2 BASIC0.81□□□□□ -2.28
LINC00643Q86TS7 AC073326.1-201ENST00000451832 557 ntTSL 3 BASIC0.81□□□□□ -2.28
LINC00643Q86TS7 FABP5P13-201ENST00000452144 328 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 AL445465.2-201ENST00000455530 461 ntTSL 2 BASIC0.81□□□□□ -2.28
LINC00643Q86TS7 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC0.81□□□□□ -2.28
LINC00643Q86TS7 RNU6-420P-201ENST00000458780 107 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC0.81□□□□□ -2.28
LINC00643Q86TS7 AC092436.1-201ENST00000506450 503 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC0.81□□□□□ -2.28
LINC00643Q86TS7 AC022447.1-201ENST00000515358 464 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 RN7SKP157-201ENST00000516174 282 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 RNU6ATAC12P-201ENST00000516542 115 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 RNA5SP137-201ENST00000516833 135 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 DUXAP2-201ENST00000519198 589 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 AC103783.1-201ENST00000520506 373 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 AC090821.2-201ENST00000523552 176 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC0.81□□□□□ -2.28
LINC00643Q86TS7 NAP1L1P1-201ENST00000524793 1063 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 IMMP1LP2-201ENST00000552954 492 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 RPAP2P1-201ENST00000603626 1168 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 AL109618.2-201ENST00000605527 211 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 AC018638.7-201ENST00000605836 1114 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC0.81□□□□□ -2.28
LINC00643Q86TS7 AP002826.1-201ENST00000608835 315 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC0.81□□□□□ -2.28
LINC00643Q86TS7 AC092192.1-201ENST00000633154 1018 ntBASIC0.81□□□□□ -2.28
LINC00643Q86TS7 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC0.81□□□□□ -2.28
LINC00643Q86TS7 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC0.81□□□□□ -2.28
LINC00643Q86TS7 TIGD2-201ENST00000317005 2083 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
LINC00643Q86TS7 AC006020.1-201ENST00000420179 1854 ntBASIC0.8□□□□□ -2.28
LINC00643Q86TS7 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
LINC00643Q86TS7 MIR424-201ENST00000362227 98 ntBASIC0.8□□□□□ -2.28
LINC00643Q86TS7 RNU6-173P-201ENST00000364215 104 ntBASIC0.8□□□□□ -2.28
LINC00643Q86TS7 RNU6-1035P-201ENST00000384477 107 ntBASIC0.8□□□□□ -2.28
LINC00643Q86TS7 MIR218-1-201ENST00000384999 110 ntBASIC0.8□□□□□ -2.28
LINC00643Q86TS7 RN7SKP32-201ENST00000410167 303 ntBASIC0.8□□□□□ -2.28
LINC00643Q86TS7 AL513185.2-201ENST00000425543 193 ntBASIC0.8□□□□□ -2.28
LINC00643Q86TS7 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC0.8□□□□□ -2.28
LINC00643Q86TS7 AC241584.1-201ENST00000438469 1241 ntBASIC0.8□□□□□ -2.28
LINC00643Q86TS7 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC0.8□□□□□ -2.28
LINC00643Q86TS7 AC003989.2-201ENST00000440224 169 ntBASIC0.8□□□□□ -2.28
LINC00643Q86TS7 RN7SL610P-201ENST00000463845 291 ntBASIC0.8□□□□□ -2.28
LINC00643Q86TS7 APOA2-205ENST00000468465 421 ntTSL 2 BASIC0.8□□□□□ -2.28
LINC00643Q86TS7 SNORA44.1-201ENST00000517031 108 ntBASIC0.8□□□□□ -2.28
LINC00643Q86TS7 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC0.8□□□□□ -2.28
LINC00643Q86TS7 AC008562.1-201ENST00000521763 330 ntBASIC0.8□□□□□ -2.28
LINC00643Q86TS7 AC107953.1-201ENST00000522216 297 ntBASIC0.8□□□□□ -2.28
LINC00643Q86TS7 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC0.8□□□□□ -2.28
LINC00643Q86TS7 AC074051.3-201ENST00000570238 358 ntBASIC0.8□□□□□ -2.28
LINC00643Q86TS7 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC0.8□□□□□ -2.28
LINC00643Q86TS7 MIR4295-201ENST00000585286 85 ntBASIC0.8□□□□□ -2.28
LINC00643Q86TS7 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC0.8□□□□□ -2.28
LINC00643Q86TS7 AL023583.1-201ENST00000607518 1143 ntBASIC0.8□□□□□ -2.28
LINC00643Q86TS7 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC0.8□□□□□ -2.28
LINC00643Q86TS7 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC0.8□□□□□ -2.28
LINC00643Q86TS7 AC008568.2-201ENST00000623862 2313 ntBASIC0.8□□□□□ -2.28
LINC00643Q86TS7 RNU6-1155P-201ENST00000363554 107 ntBASIC0.79□□□□□ -2.28
LINC00643Q86TS7 RNA5SP27-201ENST00000363839 119 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms