Protein–RNA interactions for Protein: Q9R053

Scn11a, Sodium channel protein type 11 subunit alpha, mousemouse

Predictions only

Length 1,765 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn11aQ9R053 Ube2w-201ENSMUST00000117146 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn11aQ9R053 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn11aQ9R053 Rab35-201ENSMUST00000031492 2820 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn11aQ9R053 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn11aQ9R053 Gm26613-201ENSMUST00000180919 1457 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Scn11aQ9R053 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
Scn11aQ9R053 Gpc3-201ENSMUST00000069360 2216 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn11aQ9R053 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
Scn11aQ9R053 Clasrp-201ENSMUST00000086041 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn11aQ9R053 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Scn11aQ9R053 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Scn11aQ9R053 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn11aQ9R053 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Scn11aQ9R053 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
Scn11aQ9R053 Sytl1-202ENSMUST00000105908 1730 ntTSL 5 BASIC19.2■□□□□ 0.66
Scn11aQ9R053 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn11aQ9R053 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Scn11aQ9R053 1810062O18Rik-203ENSMUST00000129237 647 ntTSL 5 BASIC19.2■□□□□ 0.66
Scn11aQ9R053 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC19.2■□□□□ 0.66
Scn11aQ9R053 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
Scn11aQ9R053 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Scn11aQ9R053 Gm9727-201ENSMUST00000161387 555 ntBASIC19.2■□□□□ 0.66
Scn11aQ9R053 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
Scn11aQ9R053 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC19.2■□□□□ 0.66
Scn11aQ9R053 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC19.2■□□□□ 0.66
Scn11aQ9R053 Elof1-203ENSMUST00000213233 810 ntAPPRIS P1 TSL 3 BASIC19.2■□□□□ 0.66
Scn11aQ9R053 Gm38575-201ENSMUST00000213881 652 ntTSL 2 BASIC19.2■□□□□ 0.66
Scn11aQ9R053 Cplx3-202ENSMUST00000215487 594 ntTSL 3 BASIC19.2■□□□□ 0.66
Scn11aQ9R053 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn11aQ9R053 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC19.2■□□□□ 0.66
Scn11aQ9R053 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn11aQ9R053 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn11aQ9R053 Ppp2r1b-211ENSMUST00000176798 2074 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Scn11aQ9R053 Adgrb1-201ENSMUST00000042035 6228 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Scn11aQ9R053 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC19.2■□□□□ 0.66
Scn11aQ9R053 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Flg-204ENSMUST00000178752 756 ntAPPRIS ALT2 BASIC19.19■□□□□ 0.66
Scn11aQ9R053 5830454E08Rik-202ENSMUST00000213974 744 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn11aQ9R053 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Col13a1-204ENSMUST00000105453 2935 ntTSL 2 BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Spatc1-201ENSMUST00000074173 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Elf2-202ENSMUST00000091144 2366 ntTSL 5 BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Cnih1-201ENSMUST00000015903 1538 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Nagpa-201ENSMUST00000023911 2143 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm4609-201ENSMUST00000106443 1002 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm5138-201ENSMUST00000113842 1002 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm15191-201ENSMUST00000117933 1000 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm12182-201ENSMUST00000118655 1008 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm13882-201ENSMUST00000120886 1002 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm10284-201ENSMUST00000145057 1005 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm10481-201ENSMUST00000179228 1002 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm2574-201ENSMUST00000181051 1002 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm3200-201ENSMUST00000181493 1002 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm8825-201ENSMUST00000182565 998 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm4518-201ENSMUST00000182638 718 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm8330-201ENSMUST00000182754 1008 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm4575-201ENSMUST00000182991 1002 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm8709-201ENSMUST00000183230 1012 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm45144-201ENSMUST00000207473 354 ntTSL 5 BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Commd5-201ENSMUST00000068407 1037 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm10293-201ENSMUST00000076317 1002 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Gm6316-201ENSMUST00000082064 1020 ntBASIC19.19■□□□□ 0.66
Scn11aQ9R053 Aire-213ENSMUST00000148469 1618 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Scn11aQ9R053 Dlg3-201ENSMUST00000000901 4885 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Scn11aQ9R053 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
Scn11aQ9R053 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Scn11aQ9R053 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Scn11aQ9R053 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Scn11aQ9R053 Vopp1-201ENSMUST00000114297 2919 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Scn11aQ9R053 Chst8-201ENSMUST00000078686 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Scn11aQ9R053 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Scn11aQ9R053 Matk-202ENSMUST00000117488 1980 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
Scn11aQ9R053 Gm15920-201ENSMUST00000118998 402 ntBASIC19.18■□□□□ 0.66
Scn11aQ9R053 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Scn11aQ9R053 AC154222.1-201ENSMUST00000223882 475 ntBASIC19.18■□□□□ 0.66
Scn11aQ9R053 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Scn11aQ9R053 Gm5648-201ENSMUST00000122244 1587 ntBASIC19.18■□□□□ 0.66
Scn11aQ9R053 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Scn11aQ9R053 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Scn11aQ9R053 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Scn11aQ9R053 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Scn11aQ9R053 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Scn11aQ9R053 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn11aQ9R053 Dctd-201ENSMUST00000033966 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Scn11aQ9R053 Sbk2-202ENSMUST00000182214 2236 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms