Protein–RNA interactions for Protein: Q9JKE1

Trem3, TREM-3, mousemouse

Predictions only

Length 183 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trem3Q9JKE1 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Wac-215ENSMUST00000171042 2205 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Tmem229b-201ENSMUST00000056660 3860 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trem3Q9JKE1 AC154855.1-201ENSMUST00000227353 1458 ntBASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Mir1199-201ENSMUST00000117015 119 ntBASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Gm13181-201ENSMUST00000120117 1069 ntBASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Gm16042-201ENSMUST00000204813 1247 ntBASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC13.19□□□□□ -0.3
Trem3Q9JKE1 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Timm23-208ENSMUST00000226683 750 ntBASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Med29-201ENSMUST00000003536 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Espn-204ENSMUST00000080042 1402 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Fam149b-211ENSMUST00000224930 2716 ntAPPRIS ALT2 BASIC13.19□□□□□ -0.3
Trem3Q9JKE1 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC13.18□□□□□ -0.3
Trem3Q9JKE1 Actl10-202ENSMUST00000226583 1501 ntBASIC13.18□□□□□ -0.3
Trem3Q9JKE1 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC13.18□□□□□ -0.3
Trem3Q9JKE1 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trem3Q9JKE1 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trem3Q9JKE1 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trem3Q9JKE1 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trem3Q9JKE1 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trem3Q9JKE1 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC13.18□□□□□ -0.3
Trem3Q9JKE1 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC13.18□□□□□ -0.3
Trem3Q9JKE1 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC13.18□□□□□ -0.3
Trem3Q9JKE1 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trem3Q9JKE1 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Trem3Q9JKE1 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trem3Q9JKE1 Gaa-202ENSMUST00000106258 1369 ntTSL 1 (best) BASIC13.18□□□□□ -0.3
Trem3Q9JKE1 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trem3Q9JKE1 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC13.18□□□□□ -0.3
Trem3Q9JKE1 Pi4k2b-202ENSMUST00000031082 3034 ntAPPRIS ALT2 TSL 2 BASIC13.18□□□□□ -0.3
Trem3Q9JKE1 Atxn7l2-203ENSMUST00000117784 2387 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Myo15b-202ENSMUST00000093911 9340 ntAPPRIS P1 TSL 5 BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Nrn1-201ENSMUST00000037623 1619 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Tcf3-207ENSMUST00000105343 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Lefty2-201ENSMUST00000085797 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Prss8-201ENSMUST00000032988 1852 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Trpv4-203ENSMUST00000112219 2295 ntTSL 5 BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Sf1-203ENSMUST00000113488 2282 ntTSL 5 BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Zbtb25-201ENSMUST00000167011 1681 ntAPPRIS P1 TSL 2 BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Shcbp1l-201ENSMUST00000042373 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC13.17□□□□□ -0.3
Trem3Q9JKE1 Gm16011-201ENSMUST00000121567 2662 ntBASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Serf2-204ENSMUST00000139253 3056 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Rft1-201ENSMUST00000064230 2387 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Acvrl1-203ENSMUST00000119063 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Ap1g1-202ENSMUST00000093157 6899 ntAPPRIS P3 TSL 5 BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Impa1-204ENSMUST00000191670 1100 ntTSL 2 BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Plpp1-202ENSMUST00000070951 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Rundc3b-201ENSMUST00000047485 3677 ntAPPRIS P3 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Tbp-201ENSMUST00000014911 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Dnajc2-201ENSMUST00000030771 2133 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Tmem65-201ENSMUST00000072113 3747 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Zfp800-202ENSMUST00000115320 4311 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Ndufaf3-201ENSMUST00000074208 1487 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Nkpd1-202ENSMUST00000207576 2916 ntAPPRIS P2 TSL 5 BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC13.16□□□□□ -0.3
Trem3Q9JKE1 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trem3Q9JKE1 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trem3Q9JKE1 Gm26697-201ENSMUST00000180898 1760 ntTSL 1 (best) BASIC13.15□□□□□ -0.3
Trem3Q9JKE1 Cops6-201ENSMUST00000019638 1787 ntAPPRIS P2 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trem3Q9JKE1 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Trem3Q9JKE1 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC13.15□□□□□ -0.3
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms