Protein–RNA interactions for Protein: Q9ES34

Ube3b, Ubiquitin-protein ligase E3B, mousemouse

Predictions only

Length 1,070 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ube3bQ9ES34 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ube3bQ9ES34 Gm7616-201ENSMUST00000143112 624 ntTSL 3 BASIC19.31■□□□□ 0.68
Ube3bQ9ES34 Stard3nl-208ENSMUST00000200323 1128 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ube3bQ9ES34 Gm7506-201ENSMUST00000207758 815 ntBASIC19.31■□□□□ 0.68
Ube3bQ9ES34 Gm5617-201ENSMUST00000048824 531 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Ube3bQ9ES34 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Ube3bQ9ES34 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ube3bQ9ES34 Mturn-203ENSMUST00000190641 5303 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ube3bQ9ES34 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ube3bQ9ES34 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ube3bQ9ES34 Relt-201ENSMUST00000008462 2851 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ube3bQ9ES34 Gm7292-201ENSMUST00000194706 2527 ntBASIC19.3■□□□□ 0.68
Ube3bQ9ES34 Cfap20-208ENSMUST00000213086 2544 ntTSL 2 BASIC19.3■□□□□ 0.68
Ube3bQ9ES34 Wnt4-201ENSMUST00000045747 4194 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ube3bQ9ES34 Dhx36-201ENSMUST00000029336 5620 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ube3bQ9ES34 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ube3bQ9ES34 Ilvbl-204ENSMUST00000218271 1606 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ube3bQ9ES34 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ube3bQ9ES34 4933405L10Rik-201ENSMUST00000013302 1214 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ube3bQ9ES34 Gm28659-201ENSMUST00000188013 759 ntBASIC19.3■□□□□ 0.68
Ube3bQ9ES34 Gm5864-201ENSMUST00000202263 970 ntBASIC19.3■□□□□ 0.68
Ube3bQ9ES34 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC19.3■□□□□ 0.68
Ube3bQ9ES34 AC164629.2-201ENSMUST00000217916 270 ntBASIC19.3■□□□□ 0.68
Ube3bQ9ES34 Methig1-201ENSMUST00000075675 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ube3bQ9ES34 Sumo1-201ENSMUST00000091374 1215 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ube3bQ9ES34 Asph-210ENSMUST00000108337 2836 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ube3bQ9ES34 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ube3bQ9ES34 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC19.3■□□□□ 0.68
Ube3bQ9ES34 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ube3bQ9ES34 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ube3bQ9ES34 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ube3bQ9ES34 Cobll1-205ENSMUST00000112431 5024 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ube3bQ9ES34 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ube3bQ9ES34 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ube3bQ9ES34 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Ube3bQ9ES34 Cabp2-205ENSMUST00000162908 911 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ube3bQ9ES34 Mir8098-201ENSMUST00000184011 137 ntBASIC19.29■□□□□ 0.68
Ube3bQ9ES34 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC19.29■□□□□ 0.68
Ube3bQ9ES34 Hbb-bt-201ENSMUST00000098192 703 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ube3bQ9ES34 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ube3bQ9ES34 Chpt1-201ENSMUST00000020253 3898 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ube3bQ9ES34 Klf3-201ENSMUST00000165536 5221 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ube3bQ9ES34 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC19.29■□□□□ 0.68
Ube3bQ9ES34 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
Ube3bQ9ES34 Dlgap4-212ENSMUST00000169464 4851 ntTSL 5 BASIC19.29■□□□□ 0.68
Ube3bQ9ES34 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ube3bQ9ES34 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ube3bQ9ES34 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Ube3bQ9ES34 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ube3bQ9ES34 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ube3bQ9ES34 Rbm3-206ENSMUST00000115621 1338 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ube3bQ9ES34 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Ube3bQ9ES34 Agfg1-204ENSMUST00000186302 2352 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
Ube3bQ9ES34 Haglr-201ENSMUST00000100000 2085 ntBASIC19.28■□□□□ 0.68
Ube3bQ9ES34 Zkscan3-202ENSMUST00000116433 1421 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ube3bQ9ES34 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ube3bQ9ES34 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC19.28■□□□□ 0.68
Ube3bQ9ES34 Gm12536-201ENSMUST00000129102 358 ntTSL 2 BASIC19.28■□□□□ 0.68
Ube3bQ9ES34 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ube3bQ9ES34 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC19.28■□□□□ 0.68
Ube3bQ9ES34 Gm9172-201ENSMUST00000212092 954 ntBASIC19.28■□□□□ 0.68
Ube3bQ9ES34 Gm7461-201ENSMUST00000058918 827 ntBASIC19.28■□□□□ 0.68
Ube3bQ9ES34 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ube3bQ9ES34 4930512B01Rik-201ENSMUST00000021378 1856 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ube3bQ9ES34 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ube3bQ9ES34 Vim-201ENSMUST00000028062 2193 ntAPPRIS P2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Cops7b-201ENSMUST00000027446 2231 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Ube3bQ9ES34 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Gm13884-201ENSMUST00000118103 829 ntBASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Gm44357-201ENSMUST00000195897 142 ntBASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Gm19658-201ENSMUST00000196231 138 ntBASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Gm44367-201ENSMUST00000196836 138 ntBASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Gm44350-201ENSMUST00000197197 138 ntBASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Gm44390-201ENSMUST00000197533 144 ntBASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Gm44313-201ENSMUST00000198018 138 ntBASIC19.27■□□□□ 0.68
Ube3bQ9ES34 4930458A03Rik-201ENSMUST00000198197 961 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Gm44486-201ENSMUST00000198508 138 ntBASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Gm44314-201ENSMUST00000199263 138 ntBASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Gm44394-201ENSMUST00000199558 138 ntBASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Gm44484-201ENSMUST00000199873 138 ntBASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Gm44466-201ENSMUST00000200264 138 ntBASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Gm44359-201ENSMUST00000200671 138 ntBASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Gm6296-201ENSMUST00000222599 943 ntBASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ube3bQ9ES34 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
Ube3bQ9ES34 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.67
Ube3bQ9ES34 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ube3bQ9ES34 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ube3bQ9ES34 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 27.4 ms