Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 March3-202ENSMUST00000102912 1754 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Tdg-201ENSMUST00000092266 2959 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Spock3-204ENSMUST00000119068 3201 ntAPPRIS P3 TSL 5 BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Agpat3-202ENSMUST00000105387 1316 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Tead4-201ENSMUST00000006311 3076 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 Spdya-204ENSMUST00000167641 1891 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
Lima1Q9ERG0 H6pd-201ENSMUST00000030830 4745 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Gm44616-201ENSMUST00000206417 1732 ntBASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Gm9917-202ENSMUST00000181099 1499 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Bclaf3-202ENSMUST00000112464 3366 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Gps1-202ENSMUST00000116305 1827 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Gfy-201ENSMUST00000179443 1849 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Nnat-205ENSMUST00000153739 1146 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Nnat-206ENSMUST00000172487 404 ntTSL 5 BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Grin3b-201ENSMUST00000045085 3283 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Cdk10-201ENSMUST00000036880 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Fgfr4-201ENSMUST00000005452 3324 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Lima1Q9ERG0 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Tra2a-201ENSMUST00000031841 1799 ntAPPRIS P3 TSL 5 BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Itgb4-201ENSMUST00000021107 6014 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Acadvl-202ENSMUST00000102574 2168 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Dtnbp1-203ENSMUST00000220555 1589 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Gm13181-201ENSMUST00000120117 1069 ntBASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Gm7638-201ENSMUST00000121348 967 ntBASIC16.1■□□□□ 0.17
Lima1Q9ERG0 1110046J04Rik-201ENSMUST00000147622 397 ntTSL 3 BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Gm21814-202ENSMUST00000203277 873 ntBASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Gm9731-201ENSMUST00000209480 747 ntBASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Coro7-202ENSMUST00000090480 1147 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Rassf3-201ENSMUST00000026902 3522 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Tmem28-201ENSMUST00000096363 3909 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Agbl3-205ENSMUST00000115017 3719 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Pde4b-208ENSMUST00000106911 3020 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Cnot11-203ENSMUST00000161515 3482 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Nectin2-201ENSMUST00000075447 2735 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Lima1Q9ERG0 Zdhhc18-201ENSMUST00000084238 4580 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Pax8-201ENSMUST00000028355 2560 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Tpm4-201ENSMUST00000003575 2128 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Adgrl1-201ENSMUST00000045393 5643 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Ubtf-207ENSMUST00000128016 1062 ntTSL 2 BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Mir5122-201ENSMUST00000175004 89 ntBASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Rps12-206ENSMUST00000218221 460 ntTSL 5 BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Otx2os1-204ENSMUST00000227221 751 ntBASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Lysmd2-201ENSMUST00000034702 1189 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Galnt13-204ENSMUST00000112636 7530 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Tnfaip2-201ENSMUST00000102745 3762 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Tmx4-203ENSMUST00000110120 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Hnrnph1-202ENSMUST00000077817 2126 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Lima1Q9ERG0 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 22.1 ms