Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Tpd52-205ENSMUST00000120143 6317 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Vps28Q9D1C8 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vps28Q9D1C8 Gm10052-201ENSMUST00000168019 960 ntBASIC16.68■□□□□ 0.26
Vps28Q9D1C8 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC16.68■□□□□ 0.26
Vps28Q9D1C8 Gm7729-201ENSMUST00000050143 801 ntBASIC16.68■□□□□ 0.26
Vps28Q9D1C8 Hist1h1a-201ENSMUST00000055770 741 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Vps28Q9D1C8 Hivep3-201ENSMUST00000084306 2973 ntBASIC16.68■□□□□ 0.26
Vps28Q9D1C8 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vps28Q9D1C8 Rab11fip4-201ENSMUST00000017783 7156 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vps28Q9D1C8 Stxbp5l-202ENSMUST00000114775 1691 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Vps28Q9D1C8 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Vps28Q9D1C8 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vps28Q9D1C8 Gm26596-201ENSMUST00000180464 2655 ntBASIC16.68■□□□□ 0.26
Vps28Q9D1C8 Agpat3-203ENSMUST00000105388 3681 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Vps28Q9D1C8 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vps28Q9D1C8 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Vps28Q9D1C8 Uts2r-201ENSMUST00000039044 1703 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Kcng4-202ENSMUST00000164382 1875 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Gm15442-201ENSMUST00000117905 1527 ntBASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Gm15295-201ENSMUST00000139874 488 ntTSL 5 BASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Gm27357-201ENSMUST00000183754 135 ntBASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Gm18669-201ENSMUST00000216049 778 ntBASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Spem1-201ENSMUST00000045771 1041 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Gpr161-202ENSMUST00000178700 1827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Casp8-204ENSMUST00000191201 1849 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vps28Q9D1C8 A830073O21Rik-202ENSMUST00000205693 3096 ntBASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Susd1-202ENSMUST00000107544 3220 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Vps28Q9D1C8 Fhl1-203ENSMUST00000114769 2770 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Atp5b-201ENSMUST00000026459 1916 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Fcho1-209ENSMUST00000146100 3188 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Abl1-202ENSMUST00000075759 6327 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 2310009B15Rik-201ENSMUST00000112025 565 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Gm37280-201ENSMUST00000194583 375 ntTSL 3 BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Pigs-201ENSMUST00000048073 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Drd2-201ENSMUST00000075764 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Braf-201ENSMUST00000002487 9728 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Fcgrt-203ENSMUST00000210642 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Kcnn1-207ENSMUST00000212509 1608 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Vps28Q9D1C8 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vps28Q9D1C8 Mrpl57-201ENSMUST00000022538 2877 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vps28Q9D1C8 Plekha4-202ENSMUST00000209517 2577 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
Vps28Q9D1C8 Tead3-201ENSMUST00000114799 2448 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vps28Q9D1C8 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vps28Q9D1C8 Wbp2-202ENSMUST00000106444 1012 ntTSL 2 BASIC16.65■□□□□ 0.26
Vps28Q9D1C8 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
Vps28Q9D1C8 Cd82-204ENSMUST00000111257 1003 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Vps28Q9D1C8 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vps28Q9D1C8 1700066B19Rik-201ENSMUST00000097617 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vps28Q9D1C8 Guf1-202ENSMUST00000087228 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vps28Q9D1C8 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vps28Q9D1C8 Coro2a-202ENSMUST00000107756 4154 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vps28Q9D1C8 Mybl2-201ENSMUST00000018005 3651 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vps28Q9D1C8 Dclk2-208ENSMUST00000194452 2066 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Vps28Q9D1C8 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Vps28Q9D1C8 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Vps28Q9D1C8 Ptgis-201ENSMUST00000018113 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps28Q9D1C8 Vstm5-201ENSMUST00000034413 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps28Q9D1C8 Rnf121-202ENSMUST00000096639 2249 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps28Q9D1C8 Gm43077-201ENSMUST00000200602 491 ntTSL 3 BASIC16.64■□□□□ 0.25
Vps28Q9D1C8 D030044L04Rik-201ENSMUST00000204220 1291 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Vps28Q9D1C8 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps28Q9D1C8 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps28Q9D1C8 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps28Q9D1C8 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC16.64■□□□□ 0.25
Vps28Q9D1C8 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps28Q9D1C8 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Vps28Q9D1C8 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps28Q9D1C8 Celf1-201ENSMUST00000005643 4830 ntAPPRIS P4 TSL 5 BASIC16.64■□□□□ 0.25
Vps28Q9D1C8 Mycs-201ENSMUST00000058404 2368 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Vps28Q9D1C8 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps28Q9D1C8 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps28Q9D1C8 Ap1s1-201ENSMUST00000111080 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Vps28Q9D1C8 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Tmprss5-201ENSMUST00000070390 2047 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Vps28Q9D1C8 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 50.3 ms