Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Gm6277-201ENSMUST00000180860 1839 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Zfp318-201ENSMUST00000113481 7850 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Nhsl1-209ENSMUST00000207038 4854 ntAPPRIS ALT2 TSL 5 BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Dnajc3-201ENSMUST00000022734 5141 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Ddx56Q9D0R4 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Prelid3a-201ENSMUST00000025411 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Tom1l2-201ENSMUST00000064019 2151 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Kctd1-202ENSMUST00000168989 3456 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Fhl3-201ENSMUST00000038684 1664 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Rb1-201ENSMUST00000022701 4656 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Simc1-202ENSMUST00000121401 4819 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Ano8-204ENSMUST00000213382 3785 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Rint1-205ENSMUST00000120869 1886 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Igfbp2-201ENSMUST00000047328 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Kcnq2-204ENSMUST00000103047 2899 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Lmtk2-201ENSMUST00000041804 8114 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Ddx56Q9D0R4 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Phf1-201ENSMUST00000073724 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Slit1-201ENSMUST00000025993 5045 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Smpd5-202ENSMUST00000163991 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Cldn6-201ENSMUST00000024699 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Snph-203ENSMUST00000109875 4910 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 AK157302-201ENSMUST00000104942 1924 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Crtac1-201ENSMUST00000048630 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 4930474N05Rik-203ENSMUST00000226305 2313 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Snap91-204ENSMUST00000098495 4150 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Mir770-201ENSMUST00000103252 94 ntBASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Sec61b-201ENSMUST00000065678 564 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Slc39a1-201ENSMUST00000015467 2364 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Tssc4-206ENSMUST00000177841 1364 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Gm32996-201ENSMUST00000199828 1447 ntBASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
Ddx56Q9D0R4 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Plpp6-201ENSMUST00000045674 2859 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Fam83f-201ENSMUST00000023044 2988 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Gm43072-201ENSMUST00000200283 1671 ntBASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Gm5587-201ENSMUST00000206270 674 ntBASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Mrpl28-201ENSMUST00000025014 1048 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Slc9a6-202ENSMUST00000114784 4449 ntTSL 5 BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Dtx2-203ENSMUST00000111144 2545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Fmnl3-203ENSMUST00000120633 4290 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
Ddx56Q9D0R4 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Kcmf1-201ENSMUST00000068697 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Sctr-202ENSMUST00000189037 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Gm13836-201ENSMUST00000121159 501 ntBASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Klf13-201ENSMUST00000063694 6396 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
Ddx56Q9D0R4 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 29.1 ms