Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Smc1aQ9CU62 Mrpl14-201ENSMUST00000024734 645 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Smc1aQ9CU62 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Smc1aQ9CU62 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Smc1aQ9CU62 9430097D07Rik-201ENSMUST00000100190 1501 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Smc1aQ9CU62 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Smc1aQ9CU62 Foxo3-201ENSMUST00000056974 2889 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Smc1aQ9CU62 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Smc1aQ9CU62 Adss-201ENSMUST00000016105 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Smc1aQ9CU62 Sept4-205ENSMUST00000107962 1678 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
Smc1aQ9CU62 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Smc1aQ9CU62 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Smc1aQ9CU62 Tfap2c-201ENSMUST00000030391 2838 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Smc1aQ9CU62 Pex12-205ENSMUST00000175741 2337 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Smc1aQ9CU62 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Smc1aQ9CU62 Sema6b-201ENSMUST00000001256 3736 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Smc1aQ9CU62 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smc1aQ9CU62 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smc1aQ9CU62 Cacna1i-202ENSMUST00000160424 9781 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smc1aQ9CU62 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smc1aQ9CU62 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smc1aQ9CU62 Mars-206ENSMUST00000171564 2962 ntTSL 5 BASIC18.2■□□□□ 0.5
Smc1aQ9CU62 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smc1aQ9CU62 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC18.2■□□□□ 0.5
Smc1aQ9CU62 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC18.2■□□□□ 0.5
Smc1aQ9CU62 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Smc1aQ9CU62 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC18.2■□□□□ 0.5
Smc1aQ9CU62 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smc1aQ9CU62 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Smc1aQ9CU62 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smc1aQ9CU62 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smc1aQ9CU62 Rtkn-201ENSMUST00000065512 2191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smc1aQ9CU62 Saysd1-201ENSMUST00000059666 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smc1aQ9CU62 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Smc1aQ9CU62 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
Smc1aQ9CU62 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Smc1aQ9CU62 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Smc1aQ9CU62 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Smc1aQ9CU62 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Smc1aQ9CU62 Ctnna2-205ENSMUST00000161846 4018 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Smc1aQ9CU62 Pou3f2-201ENSMUST00000178174 5587 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Smc1aQ9CU62 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Smc1aQ9CU62 Gm28033-201ENSMUST00000184224 96 ntBASIC18.19■□□□□ 0.5
Smc1aQ9CU62 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Smc1aQ9CU62 Pprc1-203ENSMUST00000111899 5246 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Smc1aQ9CU62 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Smc1aQ9CU62 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Smc1aQ9CU62 Rptor-201ENSMUST00000026671 6594 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Smc1aQ9CU62 Aida-206ENSMUST00000193625 1810 ntTSL 3 BASIC18.19■□□□□ 0.5
Smc1aQ9CU62 Tgds-201ENSMUST00000022727 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Ppan-201ENSMUST00000004203 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Hmga1-204ENSMUST00000118570 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Itpkc-201ENSMUST00000003850 3247 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 AC125311.2-201ENSMUST00000227477 1940 ntBASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Hdac2-202ENSMUST00000105510 3250 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Klf13-202ENSMUST00000183817 599 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Gm18669-201ENSMUST00000216049 778 ntBASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Gm28372-201ENSMUST00000188900 1876 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Slc8a3-202ENSMUST00000085238 4927 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Smc1aQ9CU62 Rprd1b-207ENSMUST00000152452 1910 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Pds5b-208ENSMUST00000202170 6598 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Pomp-201ENSMUST00000031654 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Bard1-201ENSMUST00000027393 5659 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Slc32a1-201ENSMUST00000045738 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Npb-202ENSMUST00000106194 530 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Npb-203ENSMUST00000106195 542 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Gpha2-202ENSMUST00000113526 762 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Gm26039-201ENSMUST00000158152 144 ntBASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Gpha2-201ENSMUST00000025698 609 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Atp6v1g2-201ENSMUST00000068261 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 9530018F02Rik-201ENSMUST00000219513 2599 ntBASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Arhgef11-201ENSMUST00000039476 6776 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Gm43272-201ENSMUST00000200599 1584 ntBASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Hmgb3-202ENSMUST00000072699 1571 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Smc1aQ9CU62 Cmip-202ENSMUST00000166750 2408 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 41.6 ms