Protein–RNA interactions for Protein: Q8CDN8

Ccdc38, Coiled-coil domain-containing protein 38, mousemouse

Predictions only

Length 563 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc38Q8CDN8 Polr3gl-201ENSMUST00000091924 1427 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc38Q8CDN8 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc38Q8CDN8 Pnkp-202ENSMUST00000098478 1550 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc38Q8CDN8 Otub1-202ENSMUST00000123594 1728 ntTSL 5 BASIC18.11■□□□□ 0.49
Ccdc38Q8CDN8 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc38Q8CDN8 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC18.11■□□□□ 0.49
Ccdc38Q8CDN8 Coq8b-201ENSMUST00000003860 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc38Q8CDN8 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc38Q8CDN8 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc38Q8CDN8 Tprn-201ENSMUST00000114336 2787 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc38Q8CDN8 Shpk-201ENSMUST00000006105 2808 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Ccdc38Q8CDN8 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC18.11■□□□□ 0.49
Ccdc38Q8CDN8 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
Ccdc38Q8CDN8 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Poli-203ENSMUST00000159389 2662 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Chrna2-202ENSMUST00000206455 1933 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Adcy7-203ENSMUST00000169037 5198 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Slc38a10-203ENSMUST00000076697 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Gm8668-201ENSMUST00000120559 1447 ntBASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Sap18-203ENSMUST00000111269 459 ntTSL 2 BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Gm14641-201ENSMUST00000136486 452 ntTSL 3 BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Rapgef3os1-201ENSMUST00000149373 483 ntTSL 3 BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Gm18959-201ENSMUST00000208954 655 ntBASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Gm45709-201ENSMUST00000213052 1075 ntTSL 5 BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Sox6os-201ENSMUST00000032900 420 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 9530085L11Rik-201ENSMUST00000203963 2115 ntBASIC18.1■□□□□ 0.49
Ccdc38Q8CDN8 Plcl2-201ENSMUST00000043938 4050 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Ogg1-201ENSMUST00000032406 1549 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Tbcb-201ENSMUST00000006254 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Gm14464-201ENSMUST00000119658 1254 ntBASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Gng2-202ENSMUST00000159028 458 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Wdr41-203ENSMUST00000160115 2851 ntTSL 5 BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Parg-204ENSMUST00000164137 3013 ntTSL 5 BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Ccdc38Q8CDN8 Plekhf1-201ENSMUST00000098513 5263 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc38Q8CDN8 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc38Q8CDN8 Psmd8-201ENSMUST00000059642 1540 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc38Q8CDN8 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc38Q8CDN8 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc38Q8CDN8 Dlg4-201ENSMUST00000018700 3204 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc38Q8CDN8 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc38Q8CDN8 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc38Q8CDN8 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Ccdc38Q8CDN8 Izumo1r-204ENSMUST00000121116 726 ntTSL 2 BASIC18.08■□□□□ 0.48
Ccdc38Q8CDN8 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC18.08■□□□□ 0.48
Ccdc38Q8CDN8 Gm19935-201ENSMUST00000209208 979 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc38Q8CDN8 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc38Q8CDN8 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc38Q8CDN8 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc38Q8CDN8 Cnbd2-201ENSMUST00000037096 2277 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc38Q8CDN8 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc38Q8CDN8 Apaf1-202ENSMUST00000159110 6433 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc38Q8CDN8 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC18.08■□□□□ 0.48
Ccdc38Q8CDN8 Ocel1-201ENSMUST00000002469 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc38Q8CDN8 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Ccdc38Q8CDN8 Tmem50b-201ENSMUST00000023686 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Miga1-205ENSMUST00000199397 2842 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Hist1h2br-203ENSMUST00000180288 1256 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Limd2-202ENSMUST00000064545 798 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Hist1h2bq-202ENSMUST00000091749 1254 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Tlk2-204ENSMUST00000106941 3699 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Gm26891-201ENSMUST00000181644 2599 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Tmem229a-201ENSMUST00000127247 5157 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Caln1-203ENSMUST00000111288 9327 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Ccdc38Q8CDN8 Gm26825-201ENSMUST00000181751 2026 ntTSL 5 BASIC18.06■□□□□ 0.48
Ccdc38Q8CDN8 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC18.06■□□□□ 0.48
Ccdc38Q8CDN8 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Ccdc38Q8CDN8 Kif17-204ENSMUST00000105821 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms