Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Arntl-203ENSMUST00000210074 2554 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Ninj2-202ENSMUST00000112711 853 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Gm10253-201ENSMUST00000194270 940 ntBASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Plpp4-203ENSMUST00000205896 714 ntTSL 5 BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Cldn13-201ENSMUST00000008987 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Kcnab3-201ENSMUST00000018614 2538 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Nudt18-203ENSMUST00000228768 1578 ntBASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Pou2f2-205ENSMUST00000108417 1937 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 St3gal3-203ENSMUST00000106410 2225 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Gm13223-201ENSMUST00000118609 747 ntBASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Ccl25-205ENSMUST00000127460 867 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 H2-Pa-201ENSMUST00000182803 626 ntBASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Gm2423-201ENSMUST00000074863 733 ntBASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Casp16-ps-201ENSMUST00000088673 531 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 0610009E02Rik-201ENSMUST00000133463 1609 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Cbl-204ENSMUST00000205968 2809 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
Col27a1Q5QNQ9 Terf1-201ENSMUST00000027057 1581 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 AC126250.1-201ENSMUST00000228343 1768 ntBASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 Esrrb-206ENSMUST00000167891 1344 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 Kxd1-204ENSMUST00000121623 884 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 Gm20412-201ENSMUST00000173249 633 ntTSL 5 BASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 Trem2-201ENSMUST00000024791 1088 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 Mrpl54-201ENSMUST00000046114 604 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 Kxd1-201ENSMUST00000093456 1216 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 Atg7-215ENSMUST00000183165 2012 ntTSL 5 BASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 Paqr4-201ENSMUST00000024702 2507 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Col27a1Q5QNQ9 B230217C12Rik-203ENSMUST00000164364 1859 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Gm26771-201ENSMUST00000180472 1082 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Cmtm5-201ENSMUST00000037814 1095 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Fam133b-201ENSMUST00000115527 1491 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Ubap1l-201ENSMUST00000147185 1380 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Gm11620-201ENSMUST00000118770 1845 ntBASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Tulp1-201ENSMUST00000041819 2017 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Wdyhv1-203ENSMUST00000226889 394 ntBASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
Col27a1Q5QNQ9 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col27a1Q5QNQ9 Il17re-203ENSMUST00000101065 1973 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col27a1Q5QNQ9 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col27a1Q5QNQ9 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col27a1Q5QNQ9 Ginm1-201ENSMUST00000039763 1557 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col27a1Q5QNQ9 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col27a1Q5QNQ9 Rgs7-203ENSMUST00000192227 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col27a1Q5QNQ9 Idh2-201ENSMUST00000107384 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col27a1Q5QNQ9 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col27a1Q5QNQ9 Dbn1-202ENSMUST00000109921 2378 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col27a1Q5QNQ9 Alkbh2-202ENSMUST00000112279 899 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col27a1Q5QNQ9 Zfp637-202ENSMUST00000112859 421 ntTSL 2 BASIC15.63■□□□□ 0.09
Col27a1Q5QNQ9 Gm7653-201ENSMUST00000214567 508 ntBASIC15.63■□□□□ 0.09
Col27a1Q5QNQ9 Tst-201ENSMUST00000058659 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col27a1Q5QNQ9 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
Col27a1Q5QNQ9 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC15.63■□□□□ 0.09
Col27a1Q5QNQ9 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
Col27a1Q5QNQ9 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 4833418N02Rik-202ENSMUST00000146560 1495 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Prkag1-201ENSMUST00000168846 1638 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Dhdds-202ENSMUST00000105885 998 ntTSL 5 BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Gm12008-201ENSMUST00000117791 755 ntBASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Abhd11os-201ENSMUST00000136022 604 ntTSL 2 BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Col27a1Q5QNQ9 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC15.62■□□□□ 0.09
Retrieved 100 of 76,532 protein–RNA pairs in 53.4 ms