Protein–RNA interactions for Protein: Q5NCP0

Rnf43, E3 ubiquitin-protein ligase RNF43, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf43Q5NCP0 Nrl-202ENSMUST00000111404 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Rnf43Q5NCP0 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Rnf43Q5NCP0 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Rnf43Q5NCP0 Snx11-202ENSMUST00000107661 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Zmym3-204ENSMUST00000118092 1502 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Casp3-201ENSMUST00000093517 1520 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Actr3-202ENSMUST00000178474 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Higd1b-202ENSMUST00000107072 497 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Higd1b-203ENSMUST00000107073 530 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Gm4189-202ENSMUST00000174167 367 ntTSL 3 BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Hsd3b2-203ENSMUST00000177651 1122 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Rps13-ps1-201ENSMUST00000183478 538 ntBASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Sox2ot-202ENSMUST00000196058 753 ntTSL 3 BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Gm42670-201ENSMUST00000201816 1292 ntBASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Higd1b-201ENSMUST00000021302 735 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 AC107711.5-202ENSMUST00000226429 702 ntBASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 6030408B16Rik-201ENSMUST00000071328 1155 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Fxyd6-201ENSMUST00000085939 1788 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Fam129c-208ENSMUST00000143662 2267 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Mal-202ENSMUST00000028854 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Stk33-201ENSMUST00000090414 2221 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Ppp1r9b-201ENSMUST00000038696 4508 ntAPPRIS P2 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Ipo9-201ENSMUST00000041023 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Men1-205ENSMUST00000113501 2508 ntTSL 5 BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Slc1a6-201ENSMUST00000005490 2029 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
Rnf43Q5NCP0 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Tmed9-201ENSMUST00000109905 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Nmnat3-201ENSMUST00000112935 2166 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Slc6a8-206ENSMUST00000164449 2151 ntTSL 5 BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Klhdc8a-201ENSMUST00000046071 4269 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Mef2b-201ENSMUST00000110140 1223 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Mef2b-202ENSMUST00000110141 1253 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Gm12497-201ENSMUST00000138778 237 ntBASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 1700023H06Rik-201ENSMUST00000161006 1044 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Gm7507-201ENSMUST00000183053 1008 ntBASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Gm37584-201ENSMUST00000193595 1290 ntBASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 AV026068-213ENSMUST00000223675 1171 ntBASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Gm9889-202ENSMUST00000206983 1577 ntBASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Dhx32-201ENSMUST00000033290 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Enoph1-202ENSMUST00000169390 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
Rnf43Q5NCP0 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 Zbtb22-201ENSMUST00000053429 2611 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 D730003I15Rik-202ENSMUST00000194375 1667 ntBASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 Yars2-204ENSMUST00000159962 2805 ntTSL 2 BASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 Tnfsf14-201ENSMUST00000005976 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 Gm27702-201ENSMUST00000184512 56 ntBASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 Dnmt3a-ps1-201ENSMUST00000192011 1271 ntBASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 1300002E11Rik-207ENSMUST00000211443 767 ntTSL 5 BASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 CT943659.1-201ENSMUST00000215459 326 ntBASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 Ift74-201ENSMUST00000030311 2139 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 Ruvbl2-201ENSMUST00000107771 1834 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 Taz-202ENSMUST00000114180 1786 ntAPPRIS ALT1 TSL 5 BASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 Sart3-201ENSMUST00000019118 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 Tmtc4-209ENSMUST00000148661 2719 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Rnf43Q5NCP0 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Rnf43Q5NCP0 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rnf43Q5NCP0 Vamp4-203ENSMUST00000132158 2752 ntTSL 3 BASIC16.52■□□□□ 0.24
Rnf43Q5NCP0 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Rnf43Q5NCP0 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 76,532 protein–RNA pairs in 27.7 ms