Protein–RNA interactions for Protein: Q4QRL3

Ccdc88b, Coiled-coil domain-containing protein 88B, mousemouse

Predictions only

Length 1,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88bQ4QRL3 Sdhc-201ENSMUST00000081560 815 ntTSL 3 BASIC26.4■■□□□ 1.82
Ccdc88bQ4QRL3 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
Ccdc88bQ4QRL3 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
Ccdc88bQ4QRL3 Antxr2-202ENSMUST00000199088 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
Ccdc88bQ4QRL3 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ccdc88bQ4QRL3 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ccdc88bQ4QRL3 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ccdc88bQ4QRL3 Ppp2r5d-201ENSMUST00000002839 2926 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ccdc88bQ4QRL3 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC26.39■■□□□ 1.82
Ccdc88bQ4QRL3 Rhebl1-201ENSMUST00000024518 1185 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ccdc88bQ4QRL3 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Ccdc88bQ4QRL3 Gimap3-201ENSMUST00000038811 1968 ntAPPRIS P1 TSL 2 BASIC26.39■■□□□ 1.82
Ccdc88bQ4QRL3 Rhof-201ENSMUST00000031401 2208 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
Ccdc88bQ4QRL3 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC26.39■■□□□ 1.81
Ccdc88bQ4QRL3 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ccdc88bQ4QRL3 Pigt-201ENSMUST00000103101 2562 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ccdc88bQ4QRL3 Cnbp-202ENSMUST00000113617 952 ntTSL 5 BASIC26.38■■□□□ 1.81
Ccdc88bQ4QRL3 Gm12260-201ENSMUST00000122447 411 ntBASIC26.38■■□□□ 1.81
Ccdc88bQ4QRL3 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ccdc88bQ4QRL3 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ccdc88bQ4QRL3 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ccdc88bQ4QRL3 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ccdc88bQ4QRL3 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
Ccdc88bQ4QRL3 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ccdc88bQ4QRL3 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
Ccdc88bQ4QRL3 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC26.38■■□□□ 1.81
Ccdc88bQ4QRL3 Nphp1-201ENSMUST00000028857 2260 ntAPPRIS P3 TSL 1 (best) BASIC26.38■■□□□ 1.81
Ccdc88bQ4QRL3 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
Ccdc88bQ4QRL3 Tgfb1i1-207ENSMUST00000167965 1746 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Klf9-201ENSMUST00000036884 3263 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm23935-201ENSMUST00000102303 57 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm24270-201ENSMUST00000102326 57 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm4609-201ENSMUST00000106443 1002 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm5138-201ENSMUST00000113842 1002 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm15191-201ENSMUST00000117933 1000 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm12182-201ENSMUST00000118655 1008 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm13882-201ENSMUST00000120886 1002 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm10284-201ENSMUST00000145057 1005 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm24245-201ENSMUST00000157318 57 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm10481-201ENSMUST00000179228 1002 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gapdh-ps15-201ENSMUST00000180966 1002 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm2574-201ENSMUST00000181051 1002 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm3200-201ENSMUST00000181493 1002 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm8825-201ENSMUST00000182565 998 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm4518-201ENSMUST00000182638 718 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm8330-201ENSMUST00000182754 1008 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm4575-201ENSMUST00000182991 1002 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm8709-201ENSMUST00000183230 1012 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm43661-201ENSMUST00000199099 687 ntTSL 3 BASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Apoa1-201ENSMUST00000034588 1035 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm10293-201ENSMUST00000076317 1002 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm6316-201ENSMUST00000082064 1020 ntBASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Mgat1-201ENSMUST00000081794 2976 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gm18336-201ENSMUST00000180787 2298 ntAPPRIS P1 BASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Whrn-205ENSMUST00000095038 2665 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Bpifb3-202ENSMUST00000109760 1741 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 1700029H14Rik-203ENSMUST00000134023 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Gid8-201ENSMUST00000029090 1655 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC26.37■■□□□ 1.81
Ccdc88bQ4QRL3 Snhg15-203ENSMUST00000134527 675 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Ccdc88bQ4QRL3 Gm2308-201ENSMUST00000166539 1004 ntBASIC26.36■■□□□ 1.81
Ccdc88bQ4QRL3 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Ccdc88bQ4QRL3 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
Ccdc88bQ4QRL3 Lrrc26-201ENSMUST00000028337 1190 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Ccdc88bQ4QRL3 1110038F14Rik-201ENSMUST00000071792 1010 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Ccdc88bQ4QRL3 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
Ccdc88bQ4QRL3 Mzf1-202ENSMUST00000182087 2197 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Ccdc88bQ4QRL3 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
Ccdc88bQ4QRL3 Btf3-204ENSMUST00000134542 780 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
Ccdc88bQ4QRL3 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC26.36■■□□□ 1.81
Ccdc88bQ4QRL3 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC26.36■■□□□ 1.81
Ccdc88bQ4QRL3 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
Ccdc88bQ4QRL3 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
Ccdc88bQ4QRL3 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Ccdc88bQ4QRL3 Mesp2-201ENSMUST00000107394 1944 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Ccdc88bQ4QRL3 Bicdl1-204ENSMUST00000121746 1568 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Ccdc88bQ4QRL3 Il3ra-203ENSMUST00000224163 2315 ntAPPRIS P2 BASIC26.35■■□□□ 1.81
Ccdc88bQ4QRL3 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Ccdc88bQ4QRL3 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Ccdc88bQ4QRL3 Dcaf17-202ENSMUST00000102701 1703 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Ccdc88bQ4QRL3 Gm11764-201ENSMUST00000120221 623 ntBASIC26.35■■□□□ 1.81
Ccdc88bQ4QRL3 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC26.35■■□□□ 1.81
Ccdc88bQ4QRL3 Retsat-204ENSMUST00000176168 1203 ntTSL 5 BASIC26.35■■□□□ 1.81
Ccdc88bQ4QRL3 1810008I18Rik-202ENSMUST00000187848 819 ntTSL 3 BASIC26.35■■□□□ 1.81
Ccdc88bQ4QRL3 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Ccdc88bQ4QRL3 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
Ccdc88bQ4QRL3 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
Ccdc88bQ4QRL3 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ccdc88bQ4QRL3 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ccdc88bQ4QRL3 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC26.34■■□□□ 1.81
Ccdc88bQ4QRL3 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC26.34■■□□□ 1.81
Ccdc88bQ4QRL3 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
Ccdc88bQ4QRL3 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ccdc88bQ4QRL3 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ccdc88bQ4QRL3 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ccdc88bQ4QRL3 Tmem217-201ENSMUST00000114683 904 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ccdc88bQ4QRL3 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
Ccdc88bQ4QRL3 Gm6736-201ENSMUST00000166583 948 ntBASIC26.34■■□□□ 1.81
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms