Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Limch1Q3UH68 AL731706.1-201ENSMUST00000227806 944 ntAPPRIS ALT2 BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Pola2-202ENSMUST00000165143 2397 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Lcmt2-201ENSMUST00000099486 2047 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Limch1Q3UH68 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Olah-203ENSMUST00000194918 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Prkcb-201ENSMUST00000064921 2557 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Ints8-201ENSMUST00000044616 3433 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Wdr55-201ENSMUST00000049323 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Limch1Q3UH68 Gpd1-203ENSMUST00000162194 1515 ntTSL 5 BASIC19.15■□□□□ 0.66
Limch1Q3UH68 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Limch1Q3UH68 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Limch1Q3UH68 Cdc23-201ENSMUST00000025228 2084 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Limch1Q3UH68 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Limch1Q3UH68 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC19.15■□□□□ 0.66
Limch1Q3UH68 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Limch1Q3UH68 Gm7153-201ENSMUST00000117092 455 ntBASIC19.15■□□□□ 0.66
Limch1Q3UH68 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Limch1Q3UH68 Rcc1-203ENSMUST00000105951 2326 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Limch1Q3UH68 Spef1-201ENSMUST00000028801 2328 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Limch1Q3UH68 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
Limch1Q3UH68 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
Limch1Q3UH68 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Limch1Q3UH68 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Limch1Q3UH68 Fbxo17-203ENSMUST00000108279 1563 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
Limch1Q3UH68 Ubxn11-202ENSMUST00000074690 1573 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
Limch1Q3UH68 Ppfibp1-201ENSMUST00000016631 4851 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
Limch1Q3UH68 Adck1-204ENSMUST00000222695 2253 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Limch1Q3UH68 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Limch1Q3UH68 Fam219b-202ENSMUST00000114200 3017 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Limch1Q3UH68 Dtx2-204ENSMUST00000111145 2493 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
Limch1Q3UH68 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
Limch1Q3UH68 Fam199x-201ENSMUST00000047852 8299 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Add1-204ENSMUST00000114338 4007 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Tbc1d12-201ENSMUST00000037302 4209 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Exosc5-201ENSMUST00000079634 1020 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Ccdc30-201ENSMUST00000044781 1464 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Seh1l-201ENSMUST00000025421 3516 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Slc6a1-204ENSMUST00000204074 1740 ntTSL 5 BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Kat2a-202ENSMUST00000103118 3046 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
Limch1Q3UH68 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Tcp1-209ENSMUST00000151287 2446 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Mbnl1-201ENSMUST00000099087 5655 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Ankrd13b-201ENSMUST00000037593 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Gm11860-201ENSMUST00000122346 1010 ntBASIC19.13■□□□□ 0.65
Limch1Q3UH68 Mir3081-201ENSMUST00000175305 84 ntBASIC19.13■□□□□ 0.65
Limch1Q3UH68 Bvht-202ENSMUST00000183087 588 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Gm18421-201ENSMUST00000204122 625 ntBASIC19.13■□□□□ 0.65
Limch1Q3UH68 Umpk-ps-201ENSMUST00000211897 827 ntBASIC19.13■□□□□ 0.65
Limch1Q3UH68 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Gm7461-201ENSMUST00000058918 827 ntBASIC19.13■□□□□ 0.65
Limch1Q3UH68 Madcam1-201ENSMUST00000020554 1436 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Gm26627-201ENSMUST00000181540 1487 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Gja4-201ENSMUST00000053753 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Hnrnpl-202ENSMUST00000172529 1898 ntTSL 5 BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Actr8-201ENSMUST00000016115 2119 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Taf6l-212ENSMUST00000177216 2167 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Eif4a2-201ENSMUST00000023599 2208 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Scin-201ENSMUST00000002640 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Camk2n1-201ENSMUST00000050918 4444 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Ptpro-203ENSMUST00000167679 5096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Etnk1-201ENSMUST00000032413 6433 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
Limch1Q3UH68 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Limch1Q3UH68 Ppp3cb-206ENSMUST00000161989 2322 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Limch1Q3UH68 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC19.12■□□□□ 0.65
Limch1Q3UH68 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
Limch1Q3UH68 She-201ENSMUST00000050401 5733 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Limch1Q3UH68 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Limch1Q3UH68 Tgfb1i1-205ENSMUST00000165667 1812 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Limch1Q3UH68 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC19.12■□□□□ 0.65
Retrieved 100 of 76,532 protein–RNA pairs in 69.1 ms