Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Cct8-201ENSMUST00000026704 2394 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ercc3P49135 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ercc3P49135 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Ercc3P49135 Jagn1-202ENSMUST00000204254 1147 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ercc3P49135 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC19.31■□□□□ 0.68
Ercc3P49135 Prex1-201ENSMUST00000036719 6533 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ercc3P49135 Tuba1c-201ENSMUST00000058914 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ercc3P49135 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Ercc3P49135 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ercc3P49135 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Ercc3P49135 Wdr41-205ENSMUST00000160801 3062 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Ercc3P49135 Wdr41-201ENSMUST00000056512 3063 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ercc3P49135 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Ercc3P49135 Tmem176a-201ENSMUST00000101426 1540 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ercc3P49135 Dok3-201ENSMUST00000047877 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ercc3P49135 Hnrnpll-205ENSMUST00000184635 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ercc3P49135 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
Ercc3P49135 Rbm33-204ENSMUST00000114884 6256 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
Ercc3P49135 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC19.3■□□□□ 0.68
Ercc3P49135 Paip2-201ENSMUST00000041314 1475 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ercc3P49135 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ercc3P49135 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ercc3P49135 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ercc3P49135 E2f7-205ENSMUST00000173634 827 ntTSL 2 BASIC19.3■□□□□ 0.68
Ercc3P49135 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ercc3P49135 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Ercc3P49135 Anks1b-219ENSMUST00000182600 1697 ntTSL 5 BASIC19.3■□□□□ 0.68
Ercc3P49135 Fbxl21-201ENSMUST00000045428 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ercc3P49135 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Ercc3P49135 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ercc3P49135 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
Ercc3P49135 Yipf2-204ENSMUST00000213809 1883 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ercc3P49135 Krtap1-4-201ENSMUST00000100479 593 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
Ercc3P49135 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC19.29■□□□□ 0.68
Ercc3P49135 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ercc3P49135 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ercc3P49135 Hipk2-206ENSMUST00000161779 7684 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ercc3P49135 Ankrd17-202ENSMUST00000081914 8057 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
Ercc3P49135 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ercc3P49135 Wrb-201ENSMUST00000023913 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ercc3P49135 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ercc3P49135 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Ercc3P49135 Stxbp3-201ENSMUST00000102621 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Ercc3P49135 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ercc3P49135 Kdf1-201ENSMUST00000042919 1708 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ercc3P49135 Dgkz-201ENSMUST00000028667 3584 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ercc3P49135 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ercc3P49135 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ercc3P49135 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Ercc3P49135 Dzip3-202ENSMUST00000121869 5820 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
Ercc3P49135 Pkn1-201ENSMUST00000005616 6662 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ercc3P49135 Abhd16a-201ENSMUST00000007251 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ercc3P49135 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC19.28■□□□□ 0.68
Ercc3P49135 Mrpl36-202ENSMUST00000221730 717 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
Ercc3P49135 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ercc3P49135 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
Ercc3P49135 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC19.28■□□□□ 0.68
Ercc3P49135 Irgc1-204ENSMUST00000205776 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Ercc3P49135 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ercc3P49135 Snx2-201ENSMUST00000037850 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ercc3P49135 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ercc3P49135 Adra2c-201ENSMUST00000049545 3445 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
Ercc3P49135 Rcc2-201ENSMUST00000038893 3767 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ercc3P49135 Tmem214-201ENSMUST00000114716 2220 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.68
Ercc3P49135 Abi1-215ENSMUST00000178908 2239 ntAPPRIS ALT1 TSL 5 BASIC19.27■□□□□ 0.68
Ercc3P49135 Gm26821-201ENSMUST00000181954 2652 ntTSL 5 BASIC19.27■□□□□ 0.68
Ercc3P49135 Dyx1c1-201ENSMUST00000034734 1975 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ercc3P49135 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ercc3P49135 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ercc3P49135 Gm20675-201ENSMUST00000175861 338 ntTSL 3 BASIC19.27■□□□□ 0.68
Ercc3P49135 Piga-208ENSMUST00000208697 947 ntTSL 5 BASIC19.27■□□□□ 0.68
Ercc3P49135 AC125350.1-201ENSMUST00000225115 903 ntBASIC19.27■□□□□ 0.68
Ercc3P49135 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ercc3P49135 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ercc3P49135 Hspb6-201ENSMUST00000044048 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Ercc3P49135 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
Ercc3P49135 Pde8b-202ENSMUST00000067082 2598 ntAPPRIS ALT2 TSL 5 BASIC19.27■□□□□ 0.67
Ercc3P49135 Hsd17b1-201ENSMUST00000019445 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ercc3P49135 Arntl-204ENSMUST00000210238 2976 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
Ercc3P49135 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC19.26■□□□□ 0.67
Ercc3P49135 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ercc3P49135 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ercc3P49135 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ercc3P49135 Gm38186-201ENSMUST00000192574 449 ntTSL 3 BASIC19.26■□□□□ 0.67
Ercc3P49135 Etv6-201ENSMUST00000081028 5545 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
Ercc3P49135 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
Ercc3P49135 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ercc3P49135 Sh2b1-201ENSMUST00000032978 3393 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ercc3P49135 Gm9889-202ENSMUST00000206983 1577 ntBASIC19.26■□□□□ 0.67
Ercc3P49135 Tpm1-215ENSMUST00000113705 1759 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
Ercc3P49135 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ercc3P49135 Rsph3a-201ENSMUST00000097423 2189 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ercc3P49135 Med7-209ENSMUST00000170928 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
Ercc3P49135 Luc7l2-208ENSMUST00000161538 4253 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ercc3P49135 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
Ercc3P49135 Gpr20-201ENSMUST00000064166 2144 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ercc3P49135 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
Ercc3P49135 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ercc3P49135 Ep300-201ENSMUST00000068387 9566 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Ercc3P49135 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
Retrieved 100 of 76,532 protein–RNA pairs in 26.5 ms