Protein–RNA interactions for Protein: Q9BTN0

LRFN3, Leucine-rich repeat and fibronectin type-III domain-containing protein 3, humanhuman

Predictions only

Length 628 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN3Q9BTN0 Y_RNA.460-201ENST00000384255 102 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 RNU6-301P-201ENST00000384277 107 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 MIR30B-201ENST00000384850 88 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 AL109755.1-201ENST00000401791 649 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 RPL21P67-201ENST00000402896 478 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 AL590004.1-201ENST00000405321 300 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 MIR1302-11-201ENST00000408051 138 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 MIR1302-9-201ENST00000408365 138 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 MIR1302-10-201ENST00000408734 138 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 JKAMPP1-201ENST00000413804 919 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 BTF3L4P3-201ENST00000418879 476 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 AC092832.1-201ENST00000422934 400 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 RPL31P35-201ENST00000431058 377 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 AC002486.1-201ENST00000435098 391 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 C1DP4-201ENST00000455429 424 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 AC005008.1-201ENST00000456151 612 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 RPS3AP50-201ENST00000487064 803 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 AC007182.2-201ENST00000489251 402 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 AC023194.1-201ENST00000493084 308 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 HMGN1P13-201ENST00000505795 138 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 AL592156.1-201ENST00000508758 304 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 AC016559.2-201ENST00000510759 359 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 IL7R-208ENST00000511982 612 ntTSL 2 BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 Vault.1-201ENST00000516474 102 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 AC022882.1-201ENST00000532142 501 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 NRBF2P5-201ENST00000603087 788 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 MIR1302-2-201ENST00000607096 138 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 AL732618.1-201ENST00000623251 301 ntBASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 MMP16-201ENST00000286614 11558 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 ADGRL2-208ENST00000370725 5293 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.33□□□□□ -1.72
LRFN3Q9BTN0 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 RNA5SP235-201ENST00000365411 114 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 RNY3P13-201ENST00000365542 102 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 RNU6-1074P-201ENST00000383995 104 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 MIR135A2-201ENST00000384854 100 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 RNU6-332P-201ENST00000391193 108 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 FGFR1OP2P1-201ENST00000395943 500 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AP000580.1-201ENST00000404439 358 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AL354751.2-201ENST00000415471 210 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AL845311.1-201ENST00000444791 891 ntTSL 3 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 NANOGP10-201ENST00000453325 895 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AC135721.1-201ENST00000497954 479 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 RNU6-1281P-201ENST00000516223 105 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 RNU2-10P-201ENST00000516375 211 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 DEFB108D-201ENST00000527787 222 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AC007368.1-201ENST00000536422 974 ntTSL 5 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AC126407.1-201ENST00000563044 566 ntTSL 4 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AC020978.4-201ENST00000569088 460 ntTSL 3 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AL590235.2-201ENST00000602641 632 ntTSL 5 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 XIAPP1-201ENST00000603162 600 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AL034351.1-201ENST00000605288 668 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AL050343.2-201ENST00000607338 280 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 Y_RNA.812-201ENST00000610788 101 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 Y_RNA.784-201ENST00000613803 101 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 BX664730.1-201ENST00000616196 800 ntTSL 5 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 Y_RNA.787-201ENST00000616522 101 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 Y_RNA.780-201ENST00000617336 101 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 Y_RNA.801-201ENST00000619005 101 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AC091905.1-201ENST00000624400 311 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 AC116667.1-201ENST00000604855 2072 ntBASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.32□□□□□ -1.72
LRFN3Q9BTN0 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
LRFN3Q9BTN0 RBBP6-202ENST00000348022 5739 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
LRFN3Q9BTN0 MTUS1-228ENST00000544260 3650 ntTSL 2 BASIC4.31□□□□□ -1.72
LRFN3Q9BTN0 AL731532.2-201ENST00000623542 1953 ntBASIC4.31□□□□□ -1.72
LRFN3Q9BTN0 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
LRFN3Q9BTN0 OR1S2-201ENST00000302592 978 ntBASIC4.31□□□□□ -1.72
LRFN3Q9BTN0 Y_RNA.86-201ENST00000363020 111 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms