Protein–RNA interactions for Protein: Q9JKS4

Ldb3, LIM domain-binding protein 3, mousemouse

Known RBP Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ldb3Q9JKS4 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Ldb3Q9JKS4 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ldb3Q9JKS4 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ldb3Q9JKS4 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ldb3Q9JKS4 Gm13285-201ENSMUST00000179725 1462 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Ldb3Q9JKS4 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC14.82□□□□□ -0.04
Ldb3Q9JKS4 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ldb3Q9JKS4 Mtx2-201ENSMUST00000028511 2950 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
Ldb3Q9JKS4 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Ldb3Q9JKS4 Gm13446-201ENSMUST00000124555 2033 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Ldb3Q9JKS4 Gm17200-201ENSMUST00000170214 2022 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
Ldb3Q9JKS4 Wdr1-201ENSMUST00000005234 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Brpf1-203ENSMUST00000113121 4603 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Disp3-201ENSMUST00000047720 5282 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Slc25a39-201ENSMUST00000018821 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Mir22hg-202ENSMUST00000149940 1752 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 AC115863.1-201ENSMUST00000214815 1813 ntBASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Klhdc8b-201ENSMUST00000035232 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Synpo-201ENSMUST00000097566 5060 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 0610009B22Rik-202ENSMUST00000109098 892 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Ctsg-201ENSMUST00000015583 1002 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Gm10052-201ENSMUST00000168019 960 ntBASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Gm44430-201ENSMUST00000203376 995 ntBASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Gm45328-201ENSMUST00000210942 917 ntBASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Gm7729-201ENSMUST00000050143 801 ntBASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Gm14029-201ENSMUST00000151051 1348 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Crem-228ENSMUST00000150235 2662 ntAPPRIS P2 TSL 5 BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Igf2-205ENSMUST00000121128 4722 ntTSL 2 BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Gm26803-201ENSMUST00000181705 2011 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Fancg-201ENSMUST00000030165 2771 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Klhl33-202ENSMUST00000170855 1422 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Lrrc7-201ENSMUST00000106044 5918 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Shank3-203ENSMUST00000109309 7365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Fgf17-201ENSMUST00000022697 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
Ldb3Q9JKS4 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Gm20628-201ENSMUST00000177363 3215 ntBASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Rbm47-203ENSMUST00000113724 2186 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Tmsb10-202ENSMUST00000114049 690 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 D17Wsu92e-203ENSMUST00000114863 3828 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Gm42477-201ENSMUST00000202427 469 ntTSL 3 BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 AC154471.1-201ENSMUST00000224418 436 ntBASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Tesc-201ENSMUST00000031304 1031 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Inmt-201ENSMUST00000003569 1077 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Fbrsl1-201ENSMUST00000056124 2700 ntTSL 2 BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Gm32996-201ENSMUST00000199828 1447 ntBASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Haghl-201ENSMUST00000077938 1405 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Kctd6-202ENSMUST00000170111 3052 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Slc5a10-203ENSMUST00000148584 2049 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Ifrd2-201ENSMUST00000010192 2056 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Ldb3Q9JKS4 Evx1-201ENSMUST00000031787 2877 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ldb3Q9JKS4 Lrig3-201ENSMUST00000074807 4016 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ldb3Q9JKS4 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ldb3Q9JKS4 Cidec-202ENSMUST00000113089 1720 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ldb3Q9JKS4 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ldb3Q9JKS4 Gm16075-201ENSMUST00000135873 361 ntTSL 3 BASIC14.79□□□□□ -0.04
Ldb3Q9JKS4 Hoxaas2-202ENSMUST00000155922 1567 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ldb3Q9JKS4 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ldb3Q9JKS4 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ldb3Q9JKS4 Gdf5-201ENSMUST00000040162 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ldb3Q9JKS4 Neo1-201ENSMUST00000068664 7379 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ldb3Q9JKS4 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ldb3Q9JKS4 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ldb3Q9JKS4 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Ldb3Q9JKS4 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC14.79□□□□□ -0.04
Ldb3Q9JKS4 Fam221a-201ENSMUST00000060561 2730 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Ldb3Q9JKS4 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
Ldb3Q9JKS4 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ldb3Q9JKS4 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ldb3Q9JKS4 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC14.78□□□□□ -0.04
Ldb3Q9JKS4 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ldb3Q9JKS4 Eml1-203ENSMUST00000109860 4160 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ldb3Q9JKS4 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ldb3Q9JKS4 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ldb3Q9JKS4 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Ldb3Q9JKS4 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Ldb3Q9JKS4 Ccdc174-201ENSMUST00000037783 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 37.6 ms