Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
Usp40Q8BWR4 Gm11767-201ENSMUST00000129379 493 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Usp40Q8BWR4 Tmem141-205ENSMUST00000142087 795 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Usp40Q8BWR4 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC22.34■■□□□ 1.17
Usp40Q8BWR4 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Usp40Q8BWR4 Gm40849-201ENSMUST00000222330 603 ntTSL 3 BASIC22.34■■□□□ 1.17
Usp40Q8BWR4 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
Usp40Q8BWR4 Bhlha9-201ENSMUST00000056184 1207 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
Usp40Q8BWR4 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
Usp40Q8BWR4 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC22.34■■□□□ 1.17
Usp40Q8BWR4 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
Usp40Q8BWR4 Cspg5-202ENSMUST00000196060 3790 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
Usp40Q8BWR4 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Usp40Q8BWR4 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Usp40Q8BWR4 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Usp40Q8BWR4 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Usp40Q8BWR4 Gm36447-201ENSMUST00000201101 1978 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Usp40Q8BWR4 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Usp40Q8BWR4 Sec22b-202ENSMUST00000122288 1177 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
Usp40Q8BWR4 4930442P19Rik-201ENSMUST00000193163 1240 ntBASIC22.33■■□□□ 1.17
Usp40Q8BWR4 Sod1-201ENSMUST00000023707 646 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
Usp40Q8BWR4 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC22.33■■□□□ 1.17
Usp40Q8BWR4 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC22.33■■□□□ 1.17
Usp40Q8BWR4 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
Usp40Q8BWR4 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Usp40Q8BWR4 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Usp40Q8BWR4 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Usp40Q8BWR4 Slc16a3-202ENSMUST00000100130 2386 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Usp40Q8BWR4 Arl4a-201ENSMUST00000101472 1200 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Usp40Q8BWR4 Ppil3-202ENSMUST00000114345 1175 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Usp40Q8BWR4 Gm11750-201ENSMUST00000146016 583 ntTSL 5 BASIC22.32■■□□□ 1.16
Usp40Q8BWR4 Tdrkh-208ENSMUST00000200486 1231 ntTSL 3 BASIC22.32■■□□□ 1.16
Usp40Q8BWR4 Gm5364-201ENSMUST00000216789 889 ntBASIC22.32■■□□□ 1.16
Usp40Q8BWR4 Serpine2-201ENSMUST00000027467 2210 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Usp40Q8BWR4 Gm5837-201ENSMUST00000191844 1369 ntBASIC22.32■■□□□ 1.16
Usp40Q8BWR4 Gm14317-201ENSMUST00000151754 1464 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Usp40Q8BWR4 Scrib-202ENSMUST00000063747 5440 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Usp40Q8BWR4 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
Usp40Q8BWR4 Cdc27-202ENSMUST00000106961 1863 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
Usp40Q8BWR4 Opn4-202ENSMUST00000168444 2075 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Usp40Q8BWR4 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
Usp40Q8BWR4 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC22.31■■□□□ 1.16
Usp40Q8BWR4 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Usp40Q8BWR4 Gm8839-201ENSMUST00000121279 1645 ntBASIC22.31■■□□□ 1.16
Usp40Q8BWR4 Rapsn-201ENSMUST00000050323 1606 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Usp40Q8BWR4 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Usp40Q8BWR4 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Usp40Q8BWR4 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Usp40Q8BWR4 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
Usp40Q8BWR4 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
Usp40Q8BWR4 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC22.31■■□□□ 1.16
Usp40Q8BWR4 Cfd-202ENSMUST00000217837 871 ntAPPRIS ALT2 TSL 1 (best) BASIC22.31■■□□□ 1.16
Usp40Q8BWR4 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
Usp40Q8BWR4 Gm15743-202ENSMUST00000182690 1901 ntBASIC22.31■■□□□ 1.16
Usp40Q8BWR4 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Usp40Q8BWR4 Ak5-201ENSMUST00000045262 3323 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Usp40Q8BWR4 Tmem163-203ENSMUST00000160616 2657 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
Usp40Q8BWR4 Zfp326-201ENSMUST00000031227 2667 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Usp40Q8BWR4 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC22.3■■□□□ 1.16
Usp40Q8BWR4 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
Usp40Q8BWR4 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Usp40Q8BWR4 Ftl2-ps-201ENSMUST00000118517 552 ntBASIC22.3■■□□□ 1.16
Usp40Q8BWR4 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC22.3■■□□□ 1.16
Usp40Q8BWR4 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC22.3■■□□□ 1.16
Usp40Q8BWR4 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC22.3■■□□□ 1.16
Usp40Q8BWR4 AC110091.2-202ENSMUST00000216718 1148 ntTSL 5 BASIC22.3■■□□□ 1.16
Usp40Q8BWR4 AC154757.1-201ENSMUST00000228289 336 ntBASIC22.3■■□□□ 1.16
Usp40Q8BWR4 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Usp40Q8BWR4 Gm5867-201ENSMUST00000063197 592 ntBASIC22.3■■□□□ 1.16
Usp40Q8BWR4 Lhb-201ENSMUST00000072453 678 ntAPPRIS P1 TSL 2 BASIC22.3■■□□□ 1.16
Usp40Q8BWR4 Gm15590-201ENSMUST00000078419 552 ntBASIC22.3■■□□□ 1.16
Usp40Q8BWR4 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Usp40Q8BWR4 4732440D04Rik-203ENSMUST00000191825 5428 ntBASIC22.3■■□□□ 1.16
Usp40Q8BWR4 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
Usp40Q8BWR4 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Mgea5-201ENSMUST00000026243 5024 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Hpn-201ENSMUST00000039435 1743 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Olfr1564-201ENSMUST00000112162 1091 ntAPPRIS P2 BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Sssca1-203ENSMUST00000159693 705 ntTSL 3 BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Nat8b-ps-201ENSMUST00000162660 699 ntBASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Urah-207ENSMUST00000211372 688 ntAPPRIS P3 TSL 2 BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Wdyhv1-204ENSMUST00000226955 1094 ntBASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Urah-201ENSMUST00000026554 890 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Krt83-201ENSMUST00000023718 1756 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
Usp40Q8BWR4 Dbnl-202ENSMUST00000102928 2295 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
Retrieved 100 of 76,532 protein–RNA pairs in 34.4 ms