Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Col7a1Q63870 Gm15693-201ENSMUST00000120470 637 ntBASIC13.49□□□□□ -0.25
Col7a1Q63870 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
Col7a1Q63870 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
Col7a1Q63870 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
Col7a1Q63870 Arfip1-203ENSMUST00000143514 1343 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
Col7a1Q63870 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col7a1Q63870 Tbx2-201ENSMUST00000000095 3626 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col7a1Q63870 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col7a1Q63870 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col7a1Q63870 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Col7a1Q63870 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col7a1Q63870 Gm5366-201ENSMUST00000215494 1338 ntBASIC13.48□□□□□ -0.25
Col7a1Q63870 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col7a1Q63870 Pimreg-201ENSMUST00000021164 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col7a1Q63870 Ggnbp1-201ENSMUST00000053683 1525 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col7a1Q63870 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col7a1Q63870 Gale-202ENSMUST00000102541 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col7a1Q63870 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Col7a1Q63870 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col7a1Q63870 Gm17837-201ENSMUST00000186435 985 ntBASIC13.48□□□□□ -0.25
Col7a1Q63870 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col7a1Q63870 Letmd1-201ENSMUST00000037001 2579 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col7a1Q63870 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col7a1Q63870 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
Col7a1Q63870 Psrc1-201ENSMUST00000090561 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col7a1Q63870 Crybb3-205ENSMUST00000120506 804 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
Col7a1Q63870 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col7a1Q63870 Zfp524-202ENSMUST00000207901 1263 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col7a1Q63870 Syce1l-204ENSMUST00000212269 753 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col7a1Q63870 AC121788.1-202ENSMUST00000218801 871 ntTSL 5 BASIC13.47□□□□□ -0.25
Col7a1Q63870 Slc25a20-201ENSMUST00000035222 1783 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col7a1Q63870 Stambpl1-201ENSMUST00000054956 2024 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col7a1Q63870 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
Col7a1Q63870 Gm11478-201ENSMUST00000117851 599 ntBASIC13.47□□□□□ -0.25
Col7a1Q63870 1700060J05Rik-201ENSMUST00000138377 1060 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col7a1Q63870 Sap25-206ENSMUST00000177466 1005 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
Col7a1Q63870 Mir7036b-201ENSMUST00000184791 63 ntBASIC13.47□□□□□ -0.25
Col7a1Q63870 AY702102-202ENSMUST00000194651 1173 ntBASIC13.47□□□□□ -0.25
Col7a1Q63870 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
Col7a1Q63870 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col7a1Q63870 Gm6180-201ENSMUST00000065243 498 ntBASIC13.47□□□□□ -0.25
Col7a1Q63870 Rpl13a-ps1-201ENSMUST00000071866 612 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
Col7a1Q63870 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col7a1Q63870 Gm6018-201ENSMUST00000216090 1306 ntBASIC13.47□□□□□ -0.25
Col7a1Q63870 Snip1-201ENSMUST00000052183 2345 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col7a1Q63870 Tuba3b-201ENSMUST00000087445 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col7a1Q63870 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col7a1Q63870 Snx14-205ENSMUST00000173011 2238 ntTSL 5 BASIC13.47□□□□□ -0.25
Col7a1Q63870 C130026I21Rik-201ENSMUST00000064341 1561 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col7a1Q63870 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
Col7a1Q63870 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC13.46□□□□□ -0.25
Col7a1Q63870 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC13.46□□□□□ -0.25
Col7a1Q63870 Mir3102-201ENSMUST00000175555 104 ntBASIC13.46□□□□□ -0.25
Col7a1Q63870 Gm18827-201ENSMUST00000188341 790 ntBASIC13.46□□□□□ -0.25
Col7a1Q63870 Nudt17-201ENSMUST00000029742 1039 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col7a1Q63870 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col7a1Q63870 Syt8-201ENSMUST00000097939 1300 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col7a1Q63870 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col7a1Q63870 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col7a1Q63870 Ldoc1-201ENSMUST00000075983 1459 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
Col7a1Q63870 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col7a1Q63870 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col7a1Q63870 Rnd1-202ENSMUST00000109149 1034 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col7a1Q63870 1700047K16Rik-201ENSMUST00000145068 886 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col7a1Q63870 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC13.46□□□□□ -0.25
Col7a1Q63870 Sh3bgrl3-201ENSMUST00000030651 743 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col7a1Q63870 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col7a1Q63870 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col7a1Q63870 Gm5069-201ENSMUST00000050581 1328 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col7a1Q63870 Hyls1-201ENSMUST00000115110 1973 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
Col7a1Q63870 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
Col7a1Q63870 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC13.46□□□□□ -0.25
Col7a1Q63870 Mrpl49-201ENSMUST00000007482 1722 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col7a1Q63870 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Col7a1Q63870 Gm15853-201ENSMUST00000160268 556 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Col7a1Q63870 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
Col7a1Q63870 Gm8602-201ENSMUST00000184045 607 ntBASIC13.46□□□□□ -0.26
Col7a1Q63870 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC13.46□□□□□ -0.26
Col7a1Q63870 Sdf4-202ENSMUST00000097734 973 ntTSL 1 (best) BASIC13.46□□□□□ -0.26
Col7a1Q63870 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.26
Col7a1Q63870 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col7a1Q63870 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col7a1Q63870 Pgc-201ENSMUST00000024782 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col7a1Q63870 Pde1b-201ENSMUST00000023132 3218 ntAPPRIS P2 TSL 1 (best) BASIC13.46□□□□□ -0.26
Col7a1Q63870 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col7a1Q63870 Layn-201ENSMUST00000098782 1786 ntAPPRIS P2 TSL 5 BASIC13.45□□□□□ -0.26
Col7a1Q63870 Dmtn-210ENSMUST00000228824 2377 ntBASIC13.45□□□□□ -0.26
Col7a1Q63870 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col7a1Q63870 Myl4-203ENSMUST00000106957 943 ntAPPRIS P1 TSL 3 BASIC13.45□□□□□ -0.26
Col7a1Q63870 Gm7488-201ENSMUST00000117148 684 ntBASIC13.45□□□□□ -0.26
Col7a1Q63870 Tmem61-202ENSMUST00000177702 561 ntTSL 5 BASIC13.45□□□□□ -0.26
Col7a1Q63870 Rpl8-201ENSMUST00000004072 862 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col7a1Q63870 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC13.45□□□□□ -0.26
Col7a1Q63870 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col7a1Q63870 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC13.45□□□□□ -0.26
Col7a1Q63870 Ran-201ENSMUST00000031383 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col7a1Q63870 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC13.45□□□□□ -0.26
Col7a1Q63870 Spats2l-212ENSMUST00000170139 2315 ntAPPRIS P1 TSL 5 BASIC13.45□□□□□ -0.26
Col7a1Q63870 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC13.45□□□□□ -0.26
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms