Protein–RNA interactions for Protein: Q60641

Nr1h4, Bile acid receptor, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h4Q60641 Gm12527-201ENSMUST00000117967 564 ntBASIC15.58■□□□□ 0.08
Nr1h4Q60641 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC15.58■□□□□ 0.08
Nr1h4Q60641 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC15.58■□□□□ 0.08
Nr1h4Q60641 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC15.58■□□□□ 0.08
Nr1h4Q60641 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nr1h4Q60641 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC15.58■□□□□ 0.08
Nr1h4Q60641 AC135637.1-201ENSMUST00000227750 365 ntBASIC15.58■□□□□ 0.08
Nr1h4Q60641 Fitm1-201ENSMUST00000022826 971 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nr1h4Q60641 Hand1-203ENSMUST00000160392 1806 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nr1h4Q60641 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC15.58■□□□□ 0.08
Nr1h4Q60641 Phax-201ENSMUST00000008445 1942 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
Nr1h4Q60641 Lpin2-213ENSMUST00000156570 1586 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
Nr1h4Q60641 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Kdelr2-201ENSMUST00000110731 1829 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Hey2-201ENSMUST00000019924 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Ranbp9-201ENSMUST00000144326 3371 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Ccdc84-202ENSMUST00000213813 2675 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Stam2-202ENSMUST00000127316 1928 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Aldh7a1-201ENSMUST00000066208 1914 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Gm10698-201ENSMUST00000182663 604 ntBASIC15.57■□□□□ 0.08
Nr1h4Q60641 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Uchl1-201ENSMUST00000031131 1177 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Eif1-201ENSMUST00000049385 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 A130010J15Rik-201ENSMUST00000110831 2257 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Hs3st2-201ENSMUST00000084628 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Wscd1-203ENSMUST00000108511 2866 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Epor-201ENSMUST00000006397 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Bpifb3-201ENSMUST00000088950 1821 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Ofd1-201ENSMUST00000049501 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
Nr1h4Q60641 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nr1h4Q60641 Degs1-201ENSMUST00000035295 2048 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nr1h4Q60641 Trip6-201ENSMUST00000024119 2168 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nr1h4Q60641 Pacsin2-203ENSMUST00000171436 3693 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
Nr1h4Q60641 Tbc1d19-201ENSMUST00000037337 2273 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nr1h4Q60641 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nr1h4Q60641 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Nr1h4Q60641 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC15.56■□□□□ 0.08
Nr1h4Q60641 Gpd1l-201ENSMUST00000084853 1436 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Nr1h4Q60641 Tfap2a-206ENSMUST00000224665 1958 ntAPPRIS ALT1 BASIC15.56■□□□□ 0.08
Nr1h4Q60641 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nr1h4Q60641 Pgap3-202ENSMUST00000090827 2419 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nr1h4Q60641 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nr1h4Q60641 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nr1h4Q60641 Epm2a-201ENSMUST00000069106 3287 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
Nr1h4Q60641 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
Nr1h4Q60641 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Eda-209ENSMUST00000113783 4930 ntTSL 5 BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Klhdc10-201ENSMUST00000068240 3951 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Acss3-201ENSMUST00000044668 2494 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Nmt2-203ENSMUST00000102989 2162 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Tmem47-203ENSMUST00000171953 1801 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Eif4g3-203ENSMUST00000084215 8134 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Krt88-201ENSMUST00000023781 903 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Thrsp-201ENSMUST00000043077 1277 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nr1h4Q60641 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nr1h4Q60641 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Ocrl-201ENSMUST00000001202 5253 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Rilpl1-201ENSMUST00000062153 2249 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Nr1h4Q60641 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Wnt10b-204ENSMUST00000226655 1807 ntBASIC15.54■□□□□ 0.08
Nr1h4Q60641 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Gm13181-201ENSMUST00000120117 1069 ntBASIC15.54■□□□□ 0.08
Nr1h4Q60641 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Cacna2d2-202ENSMUST00000085092 5183 ntAPPRIS P4 TSL 5 BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Klhdc8b-214ENSMUST00000195435 1612 ntTSL 5 BASIC15.54■□□□□ 0.08
Nr1h4Q60641 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms