Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
Col27a1Q5QNQ9 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col27a1Q5QNQ9 Mdk-204ENSMUST00000111309 771 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
Col27a1Q5QNQ9 Wdr38-202ENSMUST00000112872 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col27a1Q5QNQ9 Gm11515-201ENSMUST00000150818 701 ntTSL 2 BASIC15.71■□□□□ 0.11
Col27a1Q5QNQ9 Mir7036b-201ENSMUST00000184791 63 ntBASIC15.71■□□□□ 0.11
Col27a1Q5QNQ9 1700028E10Rik-205ENSMUST00000202024 924 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col27a1Q5QNQ9 Thap2-203ENSMUST00000218989 527 ntBASIC15.71■□□□□ 0.11
Col27a1Q5QNQ9 Mfsd4a-203ENSMUST00000112370 2565 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col27a1Q5QNQ9 Dvl3-204ENSMUST00000171774 2319 ntTSL 5 BASIC15.71■□□□□ 0.11
Col27a1Q5QNQ9 Gm26728-202ENSMUST00000203423 1333 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
Col27a1Q5QNQ9 Rusc1-203ENSMUST00000166687 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col27a1Q5QNQ9 Lmo4-202ENSMUST00000121112 1447 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Col27a1Q5QNQ9 Dand5-201ENSMUST00000065539 1584 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Col27a1Q5QNQ9 Atf5-203ENSMUST00000209072 595 ntTSL 5 BASIC15.71■□□□□ 0.1
Col27a1Q5QNQ9 AC125206.2-201ENSMUST00000217454 574 ntBASIC15.71■□□□□ 0.1
Col27a1Q5QNQ9 Gchfr-201ENSMUST00000057454 645 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
Col27a1Q5QNQ9 Tpi1-205ENSMUST00000172132 1607 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Gm38392-202ENSMUST00000165196 1303 ntAPPRIS P5 TSL 5 BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Hs3st1-201ENSMUST00000053116 1684 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Gstm4-201ENSMUST00000029489 1707 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Lrrc14-204ENSMUST00000137649 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Lrrc24-202ENSMUST00000049956 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Ttc39a-201ENSMUST00000064129 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Tmem79-201ENSMUST00000001456 2406 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Fam170b-201ENSMUST00000104926 1694 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Trav3-1-201ENSMUST00000103569 385 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Trav3-4-201ENSMUST00000103670 458 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Rpph1-201ENSMUST00000175096 319 ntBASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Gm29683-202ENSMUST00000208511 720 ntTSL 3 BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Plpp2-205ENSMUST00000218241 825 ntAPPRIS ALT2 TSL 3 BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Lce3e-201ENSMUST00000098886 607 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
Col27a1Q5QNQ9 Gm6226-201ENSMUST00000117765 1146 ntBASIC15.69■□□□□ 0.1
Col27a1Q5QNQ9 Pfdn5-205ENSMUST00000166658 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col27a1Q5QNQ9 Gm26664-201ENSMUST00000181140 705 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col27a1Q5QNQ9 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC15.69■□□□□ 0.1
Col27a1Q5QNQ9 Gpr146-202ENSMUST00000053120 1040 ntBASIC15.69■□□□□ 0.1
Col27a1Q5QNQ9 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
Col27a1Q5QNQ9 Perp-201ENSMUST00000019998 1952 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col27a1Q5QNQ9 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col27a1Q5QNQ9 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col27a1Q5QNQ9 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
Col27a1Q5QNQ9 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col27a1Q5QNQ9 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
Col27a1Q5QNQ9 Ppil3-203ENSMUST00000114348 1033 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Gm18489-201ENSMUST00000172565 551 ntBASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Gm18889-201ENSMUST00000174284 929 ntBASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Gm22175-201ENSMUST00000175007 78 ntBASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Lamtor1-202ENSMUST00000193465 661 ntTSL 5 BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Gm18246-201ENSMUST00000221023 728 ntBASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Gm6566-201ENSMUST00000221468 1171 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 4930428E07Rik-201ENSMUST00000222132 920 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Atp6v1c2-201ENSMUST00000020884 1569 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Tubb4b-201ENSMUST00000043584 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Slc23a4-205ENSMUST00000201355 2003 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Gm15358-201ENSMUST00000119249 520 ntBASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Sftpb-204ENSMUST00000183018 1490 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Gm38554-201ENSMUST00000201639 708 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Gm20553-201ENSMUST00000204205 844 ntBASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Igsf8-201ENSMUST00000039506 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Col27a1Q5QNQ9 Map2k3-201ENSMUST00000019076 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Gmppa-202ENSMUST00000113584 1692 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Cdk11b-202ENSMUST00000105598 2673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Gm7336-201ENSMUST00000107041 1232 ntBASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 0610010K14Rik-205ENSMUST00000108575 643 ntTSL 2 BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Umad1-206ENSMUST00000160705 624 ntAPPRIS P4 TSL 2 BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Gm37335-201ENSMUST00000192656 447 ntTSL 5 BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Gm7774-201ENSMUST00000200064 533 ntBASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Tmem107-202ENSMUST00000094081 1263 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Pbx4-201ENSMUST00000081503 1560 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 A430078I02Rik-202ENSMUST00000154066 2233 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
Col27a1Q5QNQ9 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
Retrieved 100 of 76,532 protein–RNA pairs in 42.6 ms