Protein–RNA interactions for Protein: Q5NCC9

Trim58, E3 ubiquitin-protein ligase TRIM58, mousemouse

Predictions only

Length 485 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim58Q5NCC9 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Trim58Q5NCC9 Syt3-202ENSMUST00000118962 2494 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Trim58Q5NCC9 Gm45723-201ENSMUST00000212135 1783 ntTSL 5 BASIC20.69■□□□□ 0.9
Trim58Q5NCC9 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Trim58Q5NCC9 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Trim58Q5NCC9 Krt9-201ENSMUST00000059707 2580 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 Atxn7l3-202ENSMUST00000107132 3706 ntAPPRIS P4 TSL 5 BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 Rpl13a-204ENSMUST00000209711 495 ntTSL 3 BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 Banf1-201ENSMUST00000025762 735 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 Bhlhb9-201ENSMUST00000068755 2823 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 Washc1-202ENSMUST00000116556 2887 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 Plpp7-201ENSMUST00000057423 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 Gm13283-201ENSMUST00000191112 1463 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
Trim58Q5NCC9 Adgra3-201ENSMUST00000030971 4480 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim58Q5NCC9 Sh3yl1-201ENSMUST00000020997 1750 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim58Q5NCC9 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim58Q5NCC9 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Trim58Q5NCC9 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC20.67■□□□□ 0.9
Trim58Q5NCC9 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Trim58Q5NCC9 Gm19553-201ENSMUST00000175723 494 ntTSL 5 BASIC20.67■□□□□ 0.9
Trim58Q5NCC9 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC20.67■□□□□ 0.9
Trim58Q5NCC9 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim58Q5NCC9 Wdr90-205ENSMUST00000176923 5666 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Trim58Q5NCC9 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC20.67■□□□□ 0.9
Trim58Q5NCC9 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Trim58Q5NCC9 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Trim58Q5NCC9 Casq1-201ENSMUST00000003554 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim58Q5NCC9 Naprt-201ENSMUST00000023237 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim58Q5NCC9 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Trim58Q5NCC9 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Gm19430-201ENSMUST00000193847 2137 ntBASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Plppr4-201ENSMUST00000061071 5696 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Man2a2-201ENSMUST00000098346 6554 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Rgma-204ENSMUST00000139780 3371 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Srrd-201ENSMUST00000031289 1110 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Dcps-201ENSMUST00000034539 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Vmn1r17-204ENSMUST00000228294 2084 ntAPPRIS ALT2 BASIC20.66■□□□□ 0.9
Trim58Q5NCC9 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Col4a3bp-203ENSMUST00000179226 3040 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Malsu1-203ENSMUST00000128616 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Dmc1-201ENSMUST00000023065 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Aurka-202ENSMUST00000109139 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Aurka-201ENSMUST00000028997 1905 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Smox-203ENSMUST00000110180 1617 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Dok3-202ENSMUST00000223563 1644 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Snapc3-201ENSMUST00000030206 1405 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Sdhaf4-201ENSMUST00000027338 683 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Cd164-201ENSMUST00000019962 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Sucla2-203ENSMUST00000160507 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Gusb-203ENSMUST00000111308 2038 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Fgfr1-214ENSMUST00000178276 4741 ntTSL 5 BASIC20.65■□□□□ 0.9
Trim58Q5NCC9 Rhobtb1-202ENSMUST00000067908 4422 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trim58Q5NCC9 Lrrfip2-207ENSMUST00000197256 1819 ntTSL 5 BASIC20.64■□□□□ 0.9
Trim58Q5NCC9 Gm4425-201ENSMUST00000172838 2857 ntTSL 2 BASIC20.64■□□□□ 0.9
Trim58Q5NCC9 Slc48a1-201ENSMUST00000117892 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Trim58Q5NCC9 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim58Q5NCC9 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim58Q5NCC9 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC20.64■□□□□ 0.89
Trim58Q5NCC9 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
Trim58Q5NCC9 Gm11860-201ENSMUST00000122346 1010 ntBASIC20.64■□□□□ 0.89
Trim58Q5NCC9 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC20.64■□□□□ 0.89
Trim58Q5NCC9 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC20.64■□□□□ 0.89
Trim58Q5NCC9 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Trim58Q5NCC9 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
Trim58Q5NCC9 Noc4l-201ENSMUST00000042147 2075 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim58Q5NCC9 Oas1g-201ENSMUST00000086368 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim58Q5NCC9 D430001F17Rik-201ENSMUST00000141344 1858 ntTSL 5 BASIC20.64■□□□□ 0.89
Trim58Q5NCC9 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Trim58Q5NCC9 Afg1l-201ENSMUST00000041024 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms