Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Pth1r-204ENSMUST00000198865 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Rpl39l-202ENSMUST00000121292 550 ntAPPRIS P1 TSL 2 BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Tmem176a-202ENSMUST00000168406 1086 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Gm42670-201ENSMUST00000201816 1292 ntBASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 AC154222.1-201ENSMUST00000223882 475 ntBASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Aqp12-201ENSMUST00000059676 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 2610035D17Rik-201ENSMUST00000127263 1861 ntTSL 5 BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Slain2-201ENSMUST00000143829 4828 ntTSL 5 BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Lrrfip1-212ENSMUST00000189617 2155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Timm44-201ENSMUST00000003029 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Prlhr-201ENSMUST00000051277 1572 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Rbm12b1-202ENSMUST00000069128 3069 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Upf3aQ3ULJ3 Gm26548-201ENSMUST00000181165 2029 ntTSL 1 (best) BASIC17.14■□□□□ 0.34
Upf3aQ3ULJ3 Bcor-206ENSMUST00000124033 6785 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Mrgprf-202ENSMUST00000117718 1935 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Prss12-201ENSMUST00000029603 2602 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Ptpa-208ENSMUST00000131476 989 ntTSL 2 BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Banf1-202ENSMUST00000170010 742 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Gm2213-201ENSMUST00000197485 688 ntBASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Fahd2a-201ENSMUST00000028848 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Hist1h2bg-201ENSMUST00000079251 618 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Hist1h2bn-201ENSMUST00000091709 381 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Napa-201ENSMUST00000006181 2517 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 2210016L21Rik-201ENSMUST00000031538 2607 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
Upf3aQ3ULJ3 Enoph1-201ENSMUST00000031268 1420 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3aQ3ULJ3 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Upf3aQ3ULJ3 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3aQ3ULJ3 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
Upf3aQ3ULJ3 Casp3-204ENSMUST00000211115 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3aQ3ULJ3 Htr3a-201ENSMUST00000003826 2082 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3aQ3ULJ3 Nt5c-202ENSMUST00000106530 836 ntTSL 3 BASIC17.13■□□□□ 0.33
Upf3aQ3ULJ3 Gm13036-201ENSMUST00000117799 748 ntBASIC17.13■□□□□ 0.33
Upf3aQ3ULJ3 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
Upf3aQ3ULJ3 Mpc1-205ENSMUST00000142594 961 ntTSL 5 BASIC17.13■□□□□ 0.33
Upf3aQ3ULJ3 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
Upf3aQ3ULJ3 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC17.13■□□□□ 0.33
Upf3aQ3ULJ3 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Phkg2-202ENSMUST00000121004 1840 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Zfp648-201ENSMUST00000086195 1892 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Rcc1-201ENSMUST00000030726 2278 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Gm16838-201ENSMUST00000144594 816 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Gm43935-201ENSMUST00000203569 1050 ntBASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 4931406C07Rik-209ENSMUST00000217042 691 ntTSL 3 BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 AC164441.1-201ENSMUST00000221369 1004 ntTSL 5 BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Nf2-205ENSMUST00000109910 4720 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Gm37500-201ENSMUST00000192059 1443 ntBASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Ube2e1-201ENSMUST00000022296 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Irak1-205ENSMUST00000114353 1896 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
Upf3aQ3ULJ3 Shox2-202ENSMUST00000162060 1537 ntTSL 3 BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Agfg2-202ENSMUST00000100544 2858 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Qprt-201ENSMUST00000032912 2050 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Trim7-201ENSMUST00000046903 2161 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Cfap206-201ENSMUST00000029971 2246 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Igdcc4-205ENSMUST00000213533 6220 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Igdcc4-201ENSMUST00000035499 6223 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Gm27628-201ENSMUST00000184911 107 ntBASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Igflr1-201ENSMUST00000043850 1186 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 2010003K11Rik-201ENSMUST00000048482 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Slbp-202ENSMUST00000075670 1027 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Gm11127-201ENSMUST00000113742 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Ccdc106-204ENSMUST00000207974 2492 ntTSL 2 BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Cyp21a1-201ENSMUST00000025223 2058 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Sytl3-201ENSMUST00000097430 2100 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Gnb2-212ENSMUST00000150063 1569 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
Upf3aQ3ULJ3 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms