Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Hira-202ENSMUST00000120532 2063 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Cdh11P55288 Tjap1-214ENSMUST00000225413 2189 ntAPPRIS ALT2 BASIC14.92□□□□□ -0.02
Cdh11P55288 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdh11P55288 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdh11P55288 Sf1-202ENSMUST00000113487 2649 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdh11P55288 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdh11P55288 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
Cdh11P55288 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
Cdh11P55288 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Cdh11P55288 Ly6e-201ENSMUST00000051698 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdh11P55288 Nfkbib-201ENSMUST00000032815 2061 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdh11P55288 Sppl3-201ENSMUST00000031530 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdh11P55288 Ipo8-201ENSMUST00000048418 5360 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdh11P55288 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC14.91□□□□□ -0.02
Cdh11P55288 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdh11P55288 Gm43353-201ENSMUST00000199224 1295 ntBASIC14.91□□□□□ -0.02
Cdh11P55288 Cnih3-204ENSMUST00000209607 564 ntTSL 5 BASIC14.91□□□□□ -0.02
Cdh11P55288 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdh11P55288 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdh11P55288 AC107711.5-202ENSMUST00000226429 702 ntBASIC14.91□□□□□ -0.02
Cdh11P55288 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdh11P55288 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdh11P55288 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
Cdh11P55288 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
Cdh11P55288 Ankhd1-214ENSMUST00000155329 8223 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
Cdh11P55288 Sec14l1-203ENSMUST00000103026 2589 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Cdh11P55288 Aptx-203ENSMUST00000108103 2391 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Cdh11P55288 Agpat1-201ENSMUST00000037489 2190 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdh11P55288 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC14.91□□□□□ -0.02
Cdh11P55288 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdh11P55288 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Cdh11P55288 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
Cdh11P55288 Farsa-202ENSMUST00000109754 1795 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 H2-Q4-201ENSMUST00000081435 1793 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Tmem117-201ENSMUST00000080141 2781 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Dlg5-202ENSMUST00000073687 7784 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Vgll3-201ENSMUST00000168064 7009 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Nyx-201ENSMUST00000050434 5183 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Fnbp1-205ENSMUST00000113552 1910 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Men1-203ENSMUST00000079327 2639 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Letm2-208ENSMUST00000210616 2974 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Isg20l2-201ENSMUST00000055984 2893 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC14.9□□□□□ -0.02
Cdh11P55288 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
Cdh11P55288 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
Cdh11P55288 Gm2274-201ENSMUST00000184539 609 ntBASIC14.9□□□□□ -0.02
Cdh11P55288 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC14.9□□□□□ -0.02
Cdh11P55288 Stk11-210ENSMUST00000213772 1239 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Cenps-201ENSMUST00000030813 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Sh3bp2-203ENSMUST00000118545 3034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Sclt1-201ENSMUST00000026866 3005 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Cdh11P55288 Nefh-201ENSMUST00000093369 3994 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
Cdh11P55288 A230072E10Rik-203ENSMUST00000175942 2940 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Hhatl-201ENSMUST00000035110 1870 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Axin1-202ENSMUST00000118904 2833 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Taf10-203ENSMUST00000141116 4281 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Rbfox2-204ENSMUST00000171751 3558 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Map3k6-201ENSMUST00000030677 4334 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
Cdh11P55288 Fiz1-201ENSMUST00000077385 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Ppp2r2d-207ENSMUST00000155672 1938 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Fdxr-201ENSMUST00000021078 1948 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Htr5b-201ENSMUST00000055884 1935 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Esrp1-202ENSMUST00000108310 2781 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
Cdh11P55288 Adcy3-207ENSMUST00000152065 4728 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Fubp3-202ENSMUST00000113482 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
Cdh11P55288 Zfp384-207ENSMUST00000112427 3072 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
Cdh11P55288 Tnxb-202ENSMUST00000168533 9381 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Cdh11P55288 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC14.89□□□□□ -0.03
Cdh11P55288 Gm5421-201ENSMUST00000181698 2354 ntBASIC14.89□□□□□ -0.03
Cdh11P55288 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdh11P55288 Ptf1aos-201ENSMUST00000122978 916 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Cdh11P55288 Gm24841-201ENSMUST00000158676 357 ntBASIC14.89□□□□□ -0.03
Cdh11P55288 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdh11P55288 Gm13425-201ENSMUST00000145389 5391 ntTSL 3 BASIC14.89□□□□□ -0.03
Cdh11P55288 Nr1h2-213ENSMUST00000167197 1944 ntAPPRIS P3 TSL 5 BASIC14.89□□□□□ -0.03
Cdh11P55288 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdh11P55288 Prkag2-203ENSMUST00000114975 2205 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdh11P55288 Nr3c2-204ENSMUST00000109913 5916 ntAPPRIS P2 TSL 5 BASIC14.89□□□□□ -0.03
Cdh11P55288 Tulp1-202ENSMUST00000114794 1738 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Cdh11P55288 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC14.89□□□□□ -0.03
Cdh11P55288 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC14.89□□□□□ -0.03
Cdh11P55288 Kdelc2-201ENSMUST00000037853 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Cdh11P55288 Sfmbt1-201ENSMUST00000054230 7837 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Cdh11P55288 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Cdh11P55288 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdh11P55288 App-201ENSMUST00000005406 3176 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdh11P55288 Ccdc51-201ENSMUST00000026735 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdh11P55288 Lats1-202ENSMUST00000165952 7209 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Cdh11P55288 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 39.1 ms