Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rfx1P48377 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Rfx1P48377 Ush1c-208ENSMUST00000177212 1696 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Rfx1P48377 Sik2-201ENSMUST00000041375 3552 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx1P48377 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC19.55■□□□□ 0.72
Rfx1P48377 Nr1h2-203ENSMUST00000107911 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx1P48377 Oxr1-206ENSMUST00000170127 4251 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx1P48377 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx1P48377 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx1P48377 Il11ra1-204ENSMUST00000108042 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx1P48377 Ankle2-206ENSMUST00000197188 4077 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx1P48377 Gm5643-201ENSMUST00000117081 966 ntBASIC19.55■□□□□ 0.72
Rfx1P48377 Cdk9-202ENSMUST00000120105 1565 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx1P48377 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx1P48377 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx1P48377 Gm2431-201ENSMUST00000171531 519 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Rfx1P48377 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC19.55■□□□□ 0.72
Rfx1P48377 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx1P48377 Pde5a-204ENSMUST00000200389 7603 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Rfx1P48377 Urgcp-206ENSMUST00000170116 5528 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Rfx1P48377 Sh2d4a-201ENSMUST00000066594 2718 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx1P48377 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx1P48377 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC19.55■□□□□ 0.72
Rfx1P48377 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx1P48377 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx1P48377 Gcat-202ENSMUST00000171999 1763 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx1P48377 Slc44a2-210ENSMUST00000217461 3478 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Rfx1P48377 Kat2a-201ENSMUST00000006973 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rfx1P48377 Mau2-204ENSMUST00000212308 2887 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rfx1P48377 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rfx1P48377 4933402J07Rik-201ENSMUST00000093342 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rfx1P48377 Kbtbd11-201ENSMUST00000069399 6973 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rfx1P48377 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC19.54■□□□□ 0.72
Rfx1P48377 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rfx1P48377 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rfx1P48377 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rfx1P48377 Svip-201ENSMUST00000098414 3053 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rfx1P48377 Gm38027-201ENSMUST00000192315 235 ntBASIC19.54■□□□□ 0.72
Rfx1P48377 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
Rfx1P48377 Rd3-203ENSMUST00000181512 1760 ntTSL 5 BASIC19.54■□□□□ 0.72
Rfx1P48377 Zmynd11-204ENSMUST00000110635 3881 ntTSL 5 BASIC19.54■□□□□ 0.72
Rfx1P48377 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Rfx1P48377 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rfx1P48377 Kazn-201ENSMUST00000036476 3843 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rfx1P48377 BC037032-204ENSMUST00000155191 3291 ntTSL 5 BASIC19.54■□□□□ 0.72
Rfx1P48377 Dusp14-205ENSMUST00000164891 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Rfx1P48377 Gfra2-202ENSMUST00000227633 1480 ntBASIC19.54■□□□□ 0.72
Rfx1P48377 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 Rnls-201ENSMUST00000096114 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 Erich2-203ENSMUST00000134607 1659 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Rfx1P48377 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 Ankra2-201ENSMUST00000022164 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
Rfx1P48377 Gm44878-201ENSMUST00000205812 1295 ntBASIC19.53■□□□□ 0.72
Rfx1P48377 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC19.53■□□□□ 0.72
Rfx1P48377 AC153526.5-201ENSMUST00000218661 2147 ntBASIC19.53■□□□□ 0.72
Rfx1P48377 Il3ra-202ENSMUST00000223589 738 ntBASIC19.53■□□□□ 0.72
Rfx1P48377 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Rfx1P48377 Gzme-201ENSMUST00000089549 916 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 Ascl2-201ENSMUST00000009392 1605 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 Tcf3-204ENSMUST00000105340 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 Fip1l1-203ENSMUST00000113535 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 Zpbp2-203ENSMUST00000107509 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Rfx1P48377 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Rfx1P48377 Plppr5-201ENSMUST00000039564 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rfx1P48377 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
Rfx1P48377 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rfx1P48377 Golph3-201ENSMUST00000059680 2652 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rfx1P48377 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
Rfx1P48377 Cdkl3-209ENSMUST00000120374 2770 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
Rfx1P48377 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rfx1P48377 Efr3a-201ENSMUST00000015146 5215 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rfx1P48377 Stum-201ENSMUST00000136521 6506 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rfx1P48377 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rfx1P48377 Gm15378-201ENSMUST00000121894 207 ntBASIC19.52■□□□□ 0.72
Rfx1P48377 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC19.52■□□□□ 0.72
Rfx1P48377 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC19.52■□□□□ 0.72
Rfx1P48377 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC19.52■□□□□ 0.72
Rfx1P48377 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
Rfx1P48377 Barhl1-201ENSMUST00000050776 3666 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rfx1P48377 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
Rfx1P48377 Tmem200c-201ENSMUST00000178545 3213 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
Rfx1P48377 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Rfx1P48377 Tmem184b-201ENSMUST00000074991 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
Rfx1P48377 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
Rfx1P48377 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
Rfx1P48377 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
Rfx1P48377 Snx14-206ENSMUST00000173039 2970 ntTSL 5 BASIC19.51■□□□□ 0.71
Rfx1P48377 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
Retrieved 100 of 76,532 protein–RNA pairs in 42.5 ms