Protein–RNA interactions for Protein: P29533

Vcam1, Vascular cell adhesion protein 1, mousemouse

Predictions only

Length 739 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vcam1P29533 Scamp3-203ENSMUST00000120697 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vcam1P29533 Dnal4-201ENSMUST00000023055 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vcam1P29533 Gm28111-201ENSMUST00000187786 1393 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Vcam1P29533 Mterf1a-202ENSMUST00000117463 2413 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vcam1P29533 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vcam1P29533 Atp5a1-201ENSMUST00000026495 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vcam1P29533 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vcam1P29533 Sil1-201ENSMUST00000025215 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vcam1P29533 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Vcam1P29533 Gm16845-202ENSMUST00000216270 567 ntTSL 2 BASIC18.71■□□□□ 0.59
Vcam1P29533 AC159106.1-201ENSMUST00000224421 690 ntBASIC18.71■□□□□ 0.59
Vcam1P29533 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vcam1P29533 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Vcam1P29533 Gm5867-201ENSMUST00000063197 592 ntBASIC18.71■□□□□ 0.59
Vcam1P29533 Agpat3-201ENSMUST00000001240 5980 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vcam1P29533 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vcam1P29533 Gm37500-201ENSMUST00000192059 1443 ntBASIC18.71■□□□□ 0.59
Vcam1P29533 Mpped2-202ENSMUST00000111063 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vcam1P29533 Wscd1-202ENSMUST00000108510 2956 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Vcam1P29533 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Vcam1P29533 9130024F11Rik-201ENSMUST00000135238 1300 ntTSL 2 BASIC18.71■□□□□ 0.59
Vcam1P29533 Pfkfb4-201ENSMUST00000051873 3316 ntTSL 1 (best) BASIC18.71■□□□□ 0.58
Vcam1P29533 Evx2-201ENSMUST00000001867 4191 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.58
Vcam1P29533 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vcam1P29533 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vcam1P29533 Pofut1-204ENSMUST00000109794 1688 ntTSL 5 BASIC18.7■□□□□ 0.58
Vcam1P29533 Igsf11-201ENSMUST00000023478 3443 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vcam1P29533 Csk-201ENSMUST00000034863 2749 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vcam1P29533 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vcam1P29533 Psen2-203ENSMUST00000111105 1575 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
Vcam1P29533 Gm11779-201ENSMUST00000118541 368 ntBASIC18.7■□□□□ 0.58
Vcam1P29533 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vcam1P29533 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vcam1P29533 Gm16160-201ENSMUST00000160105 781 ntTSL 2 BASIC18.7■□□□□ 0.58
Vcam1P29533 Ap2s1-204ENSMUST00000205607 372 ntTSL 3 BASIC18.7■□□□□ 0.58
Vcam1P29533 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC18.7■□□□□ 0.58
Vcam1P29533 Pigz-201ENSMUST00000052174 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vcam1P29533 Vav2-201ENSMUST00000056176 5221 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vcam1P29533 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Vcam1P29533 Gm3928-201ENSMUST00000121141 1307 ntBASIC18.7■□□□□ 0.58
Vcam1P29533 Zfyve9-202ENSMUST00000106657 6459 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
Vcam1P29533 Gpr150-201ENSMUST00000056130 2146 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Vcam1P29533 Sirt6-202ENSMUST00000119324 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Gm42743-201ENSMUST00000051089 1511 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Rab3a-201ENSMUST00000034301 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Sctr-201ENSMUST00000072886 2012 ntAPPRIS P3 TSL 2 BASIC18.69■□□□□ 0.58
Vcam1P29533 Gm15635-204ENSMUST00000208024 2539 ntBASIC18.69■□□□□ 0.58
Vcam1P29533 Fam76a-202ENSMUST00000097856 1863 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.69■□□□□ 0.58
Vcam1P29533 Sorbs1-225ENSMUST00000226047 2582 ntAPPRIS ALT2 BASIC18.69■□□□□ 0.58
Vcam1P29533 Tatdn2-202ENSMUST00000113022 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Gm8784-201ENSMUST00000222096 1435 ntBASIC18.69■□□□□ 0.58
Vcam1P29533 Slc22a16-202ENSMUST00000078314 2269 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC18.69■□□□□ 0.58
Vcam1P29533 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC18.69■□□□□ 0.58
Vcam1P29533 Gm13036-201ENSMUST00000117799 748 ntBASIC18.69■□□□□ 0.58
Vcam1P29533 Egfl8-201ENSMUST00000015611 1150 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Sardhos-201ENSMUST00000170435 265 ntTSL 3 BASIC18.69■□□□□ 0.58
Vcam1P29533 Calcb-203ENSMUST00000182816 706 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Vcam1P29533 Gm43332-201ENSMUST00000202511 1044 ntBASIC18.69■□□□□ 0.58
Vcam1P29533 Gm18622-201ENSMUST00000219361 595 ntBASIC18.69■□□□□ 0.58
Vcam1P29533 Fam26f-201ENSMUST00000062784 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Egfl8-202ENSMUST00000097345 1064 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Raxos1-201ENSMUST00000181100 2547 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Snx8-204ENSMUST00000196130 2547 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Gm17509-201ENSMUST00000165680 2375 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Vcam1P29533 Dok4-201ENSMUST00000046461 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Negr1-202ENSMUST00000074015 4983 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Rgs9-202ENSMUST00000103062 1743 ntTSL 5 BASIC18.69■□□□□ 0.58
Vcam1P29533 Hsf4-201ENSMUST00000036127 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Vcam1P29533 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vcam1P29533 Pnpla2-202ENSMUST00000064151 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vcam1P29533 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Vcam1P29533 Gm11536-201ENSMUST00000130733 535 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Vcam1P29533 Gm27628-201ENSMUST00000184911 107 ntBASIC18.68■□□□□ 0.58
Vcam1P29533 Tmem270-202ENSMUST00000201316 847 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vcam1P29533 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC18.68■□□□□ 0.58
Vcam1P29533 AC154222.1-201ENSMUST00000223882 475 ntBASIC18.68■□□□□ 0.58
Vcam1P29533 Tmem52-201ENSMUST00000023920 932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vcam1P29533 Rab7-203ENSMUST00000113597 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vcam1P29533 Mapk7-203ENSMUST00000108714 3069 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Vcam1P29533 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vcam1P29533 Nmur1-203ENSMUST00000212541 1534 ntTSL 5 BASIC18.68■□□□□ 0.58
Vcam1P29533 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vcam1P29533 Dnajc2-204ENSMUST00000115195 1994 ntTSL 5 BASIC18.68■□□□□ 0.58
Vcam1P29533 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vcam1P29533 Tril-201ENSMUST00000127748 5363 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Vcam1P29533 Snx9-201ENSMUST00000002436 2411 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vcam1P29533 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Vcam1P29533 Sri-205ENSMUST00000148633 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Vcam1P29533 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms