Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC093012.1-203ENST00000548437 450 ntTSL 2 BASIC4.82□□□□□ -1.64
HMGB1P09429 AMZ2P1-203ENST00000565833 850 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 AC012435.1-202ENST00000568772 240 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 AC068135.2-201ENST00000569293 1028 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 AC025627.2-201ENST00000576220 160 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 MTATP6P24-201ENST00000576835 677 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HMGB1P09429 MIR4307-201ENST00000582802 84 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HMGB1P09429 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC4.82□□□□□ -1.64
HMGB1P09429 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC4.82□□□□□ -1.64
HMGB1P09429 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC4.82□□□□□ -1.64
HMGB1P09429 AC087683.2-201ENST00000611384 326 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 AC097655.1-201ENST00000635075 318 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 AL773545.4-201ENST00000637262 310 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 AL513478.4-201ENST00000641636 310 ntBASIC4.82□□□□□ -1.64
HMGB1P09429 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HMGB1P09429 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.82□□□□□ -1.64
HMGB1P09429 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC4.82□□□□□ -1.64
HMGB1P09429 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HMGB1P09429 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC4.81□□□□□ -1.64
HMGB1P09429 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HMGB1P09429 SNORD35B-201ENST00000363660 87 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 LINC00587-201ENST00000374801 590 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HMGB1P09429 MIR1251-201ENST00000408552 70 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 AL513331.1-201ENST00000411908 397 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 HSPE1P12-201ENST00000412576 301 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 FAR2P2-201ENST00000413041 594 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 DNAJA1P2-201ENST00000421360 1197 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC4.81□□□□□ -1.64
HMGB1P09429 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC4.81□□□□□ -1.64
HMGB1P09429 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC4.81□□□□□ -1.64
HMGB1P09429 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.81□□□□□ -1.64
HMGB1P09429 LARP1BP3-201ENST00000437229 869 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 MTCYBP39-201ENST00000437562 491 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 Z82210.1-201ENST00000440037 231 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC4.81□□□□□ -1.64
HMGB1P09429 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC4.81□□□□□ -1.64
HMGB1P09429 LINC01445-202ENST00000458615 679 ntTSL 2 BASIC4.81□□□□□ -1.64
HMGB1P09429 RPS29P12-201ENST00000460178 152 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 AC010631.1-201ENST00000474150 156 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 RPS4XP15-201ENST00000489210 795 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 OR2A20P-203ENST00000498397 1268 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 AC114967.1-201ENST00000504890 259 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 AC005150.1-201ENST00000512831 628 ntTSL 2 BASIC4.81□□□□□ -1.64
HMGB1P09429 MIR2114-201ENST00000516645 80 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC4.81□□□□□ -1.64
HMGB1P09429 NAP1L1P1-201ENST00000524793 1063 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC4.81□□□□□ -1.64
HMGB1P09429 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC4.81□□□□□ -1.64
HMGB1P09429 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC4.81□□□□□ -1.64
HMGB1P09429 TRAV28-201ENST00000557548 323 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC4.81□□□□□ -1.64
HMGB1P09429 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC4.81□□□□□ -1.64
HMGB1P09429 AL606490.9-201ENST00000603331 271 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.81□□□□□ -1.64
HMGB1P09429 AC112187.2-201ENST00000604345 283 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 OR10AB1P-201ENST00000609613 938 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 AC128687.2-201ENST00000609657 566 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC4.81□□□□□ -1.64
HMGB1P09429 AC092192.1-201ENST00000633154 1018 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 OR52H1-202ENST00000641796 1061 ntBASIC4.81□□□□□ -1.64
HMGB1P09429 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
HMGB1P09429 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HMGB1P09429 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HMGB1P09429 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.81□□□□□ -1.64
HMGB1P09429 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC4.81□□□□□ -1.64
HMGB1P09429 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HMGB1P09429 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC4.8□□□□□ -1.64
HMGB1P09429 PREPL-206ENST00000409936 5212 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HMGB1P09429 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
HMGB1P09429 AC016397.1-201ENST00000412463 242 ntBASIC4.8□□□□□ -1.64
HMGB1P09429 BTF3L4P3-201ENST00000418879 476 ntBASIC4.8□□□□□ -1.64
HMGB1P09429 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.8□□□□□ -1.64
HMGB1P09429 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HMGB1P09429 AL593851.1-201ENST00000426171 157 ntBASIC4.8□□□□□ -1.64
HMGB1P09429 AL162414.1-201ENST00000426204 744 ntTSL 3 BASIC4.8□□□□□ -1.64
HMGB1P09429 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.8□□□□□ -1.64
HMGB1P09429 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC4.8□□□□□ -1.64
HMGB1P09429 BMI1P1-201ENST00000445879 941 ntBASIC4.8□□□□□ -1.64
HMGB1P09429 AC034195.1-202ENST00000451031 610 ntTSL 3 BASIC4.8□□□□□ -1.64
HMGB1P09429 MTCO1P42-201ENST00000457379 726 ntBASIC4.8□□□□□ -1.64
HMGB1P09429 AC092798.1-201ENST00000458542 409 ntBASIC4.8□□□□□ -1.64
HMGB1P09429 PTP4A2-203ENST00000470404 575 ntTSL 3 BASIC4.8□□□□□ -1.64
HMGB1P09429 AC233702.1-201ENST00000482905 502 ntBASIC4.8□□□□□ -1.64
HMGB1P09429 PTPRG-AS1-210ENST00000498655 547 ntTSL 4 BASIC4.8□□□□□ -1.64
HMGB1P09429 LINC02173-201ENST00000504132 521 ntTSL 2 BASIC4.8□□□□□ -1.64
HMGB1P09429 RAC1P5-201ENST00000512182 576 ntBASIC4.8□□□□□ -1.64
HMGB1P09429 LINC02103-201ENST00000512849 523 ntTSL 5 BASIC4.8□□□□□ -1.64
HMGB1P09429 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC4.8□□□□□ -1.64
HMGB1P09429 LINC02386-202ENST00000551287 564 ntTSL 4 BASIC4.8□□□□□ -1.64
HMGB1P09429 AL139395.1-201ENST00000603662 160 ntBASIC4.8□□□□□ -1.64
HMGB1P09429 AC092653.1-201ENST00000608509 531 ntBASIC4.8□□□□□ -1.64
HMGB1P09429 AC103710.1-201ENST00000610003 901 ntBASIC4.8□□□□□ -1.64
HMGB1P09429 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC4.8□□□□□ -1.64
HMGB1P09429 AC233309.1-201ENST00000619522 751 ntBASIC4.8□□□□□ -1.64
HMGB1P09429 AC092683.2-201ENST00000619740 621 ntTSL 3 BASIC4.8□□□□□ -1.64
HMGB1P09429 AC017037.3-201ENST00000625016 472 ntBASIC4.8□□□□□ -1.64
HMGB1P09429 PALMD-205ENST00000615664 1844 ntTSL 5 BASIC4.8□□□□□ -1.64
HMGB1P09429 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 149.3 ms