Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 RAB9AP1-201ENST00000449393 573 ntBASIC4.02□□□□□ -1.77
HOXC11O43248 AC098824.1-201ENST00000453565 980 ntBASIC4.02□□□□□ -1.77
HOXC11O43248 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXC11O43248 ACTR3P3-201ENST00000480448 893 ntBASIC4.02□□□□□ -1.77
HOXC11O43248 AC091906.1-201ENST00000511310 391 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXC11O43248 AC026801.2-201ENST00000515352 425 ntBASIC4.02□□□□□ -1.77
HOXC11O43248 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXC11O43248 TRMT10BP1-201ENST00000519377 943 ntBASIC4.02□□□□□ -1.77
HOXC11O43248 HMGN1P28-201ENST00000521340 364 ntBASIC4.02□□□□□ -1.77
HOXC11O43248 AP003497.1-201ENST00000528472 562 ntBASIC4.02□□□□□ -1.77
HOXC11O43248 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXC11O43248 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC4.02□□□□□ -1.77
HOXC11O43248 AL355922.1-201ENST00000555624 337 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXC11O43248 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXC11O43248 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXC11O43248 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXC11O43248 MIR7844-201ENST00000616161 122 ntBASIC4.02□□□□□ -1.77
HOXC11O43248 AC073530.2-201ENST00000623987 261 ntBASIC4.02□□□□□ -1.77
HOXC11O43248 AC011139.1-202ENST00000637744 563 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXC11O43248 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXC11O43248 AP004289.2-201ENST00000444413 1457 ntBASIC4.02□□□□□ -1.77
HOXC11O43248 OTUD4P1-201ENST00000237841 3067 ntBASIC4.02□□□□□ -1.77
HOXC11O43248 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC4.02□□□□□ -1.77
HOXC11O43248 WDR49-201ENST00000308378 2594 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXC11O43248 AL672296.1-201ENST00000427780 2158 ntBASIC4.02□□□□□ -1.77
HOXC11O43248 AL445523.1-201ENST00000451184 1362 ntBASIC4.02□□□□□ -1.77
HOXC11O43248 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXC11O43248 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXC11O43248 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXC11O43248 NT5C3A-202ENST00000381626 1909 ntAPPRIS ALT1 TSL 5 BASIC4.01□□□□□ -1.77
HOXC11O43248 GDAP2-202ENST00000369443 8828 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
HOXC11O43248 AC006378.2-201ENST00000623178 2476 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 ACADM-203ENST00000420607 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXC11O43248 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXC11O43248 SCAI-201ENST00000336505 12079 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXC11O43248 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXC11O43248 HSPA8P1-201ENST00000425843 1833 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 CFHR4-201ENST00000251424 1292 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXC11O43248 RNY4P24-201ENST00000362735 96 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 SNORD116-8-201ENST00000384365 95 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 U8.11-201ENST00000384699 133 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 U8.12-201ENST00000384701 133 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 RNU6-114P-201ENST00000384704 105 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 MIR449B-201ENST00000384995 97 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 IGLV5-37-201ENST00000390300 374 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
HOXC11O43248 U8.14-201ENST00000390843 143 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 AL138878.1-201ENST00000405131 347 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 HSFY4P-201ENST00000415994 1181 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXC11O43248 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXC11O43248 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXC11O43248 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXC11O43248 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXC11O43248 AL451062.2-201ENST00000427515 271 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 OR4K11P-201ENST00000431829 904 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 RPL37P21-201ENST00000435890 276 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 MTND1P30-201ENST00000441241 901 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 FAM103A2P-201ENST00000444122 354 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 RPL7P36-201ENST00000444633 681 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 AL358232.1-201ENST00000448030 501 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 U8.18-201ENST00000459285 133 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC4.01□□□□□ -1.77
HOXC11O43248 OR2A20P-203ENST00000498397 1268 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 AC017037.1-201ENST00000508460 471 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXC11O43248 AC022483.1-201ENST00000514020 567 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 AC119751.5-201ENST00000514077 770 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 SNORA31.8-201ENST00000516327 108 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 NAT2-202ENST00000520116 716 ntTSL 3 BASIC4.01□□□□□ -1.77
HOXC11O43248 IGKV2D-19-201ENST00000523346 262 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 OR5M7P-201ENST00000526140 972 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
HOXC11O43248 BNIP3P22-201ENST00000593399 556 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXC11O43248 AP001429.1-201ENST00000602568 530 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 AC110741.2-201ENST00000605278 268 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 AC012443.1-201ENST00000605605 231 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC4.01□□□□□ -1.77
HOXC11O43248 AC007494.3-201ENST00000624660 743 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 AC091965.5-201ENST00000624785 342 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 TAB3P1-202ENST00000452645 1634 ntBASIC4.01□□□□□ -1.77
HOXC11O43248 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXC11O43248 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
HOXC11O43248 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
HOXC11O43248 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXC11O43248 RNF128-202ENST00000324342 2654 ntTSL 1 (best) BASIC4□□□□□ -1.77
HOXC11O43248 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4□□□□□ -1.77
HOXC11O43248 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
HOXC11O43248 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC4□□□□□ -1.77
HOXC11O43248 NFIB-202ENST00000380924 840 ntTSL 5 BASIC4□□□□□ -1.77
HOXC11O43248 DEFB109C-201ENST00000382575 264 ntBASIC4□□□□□ -1.77
HOXC11O43248 DEFB109B-201ENST00000382656 264 ntBASIC4□□□□□ -1.77
HOXC11O43248 RNU6-769P-201ENST00000384407 104 ntBASIC4□□□□□ -1.77
HOXC11O43248 PTMAP5-201ENST00000393073 333 ntBASIC4□□□□□ -1.77
HOXC11O43248 Z99497.1-201ENST00000421282 135 ntBASIC4□□□□□ -1.77
HOXC11O43248 AL391336.1-201ENST00000424678 484 ntTSL 3 BASIC4□□□□□ -1.77
HOXC11O43248 AL512286.1-201ENST00000439244 400 ntBASIC4□□□□□ -1.77
HOXC11O43248 RPS17P13-201ENST00000448974 407 ntBASIC4□□□□□ -1.77
HOXC11O43248 ZNF114P1-201ENST00000453500 292 ntBASIC4□□□□□ -1.77
HOXC11O43248 AP1S2P1-201ENST00000457344 379 ntBASIC4□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 113 ms